Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.7e-204 716.1 449 100.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 1.7e-119 433.7 454 60.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.9e-118 430.3 458 57.2
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 6.7e-116 421.8 450 62.7
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.1e-115 421.0 457 58.2
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.3e-115 419.5 500 54.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.6e-114 417.2 500 52.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.1e-113 414.5 461 56.2
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.4e-113 414.1 466 55.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 9.0e-113 411.4 461 64.4
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.0e-111 407.9 453 57.6
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.7e-111 407.1 463 60.7
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.2e-111 406.8 501 52.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.9e-111 406.4 500 51.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.0e-111 405.6 463 55.3
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 6.5e-111 405.2 461 61.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.5e-110 402.1 461 62.5
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.4e-110 401.4 451 62.5
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.6e-109 399.1 501 52.3
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 7.9e-109 398.3 480 51.9
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 3.9e-108 396.0 464 60.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-107 393.7 463 54.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.7e-107 392.1 458 53.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-106 390.6 465 56.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 4.8e-106 389.0 463 52.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.8e-106 389.0 474 50.2
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.3e-106 388.7 474 50.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.2e-106 388.3 450 51.8
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-105 387.5 474 50.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.1e-105 386.3 501 52.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.1e-105 386.0 489 50.9
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 6.9e-105 385.2 452 58.0
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.5e-104 384.0 458 54.4
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.6e-104 383.3 522 50.4
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.5e-104 382.5 449 53.2
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.9e-104 382.1 511 48.3
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 7.7e-104 381.7 503 49.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 7.7e-104 381.7 459 51.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-103 380.9 453 56.1
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-103 380.6 451 52.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 8.5e-103 378.3 450 54.9
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.2e-102 376.3 490 56.1
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 5.5e-102 375.6 498 49.2
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 7.2e-102 375.2 456 60.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.2e-101 374.4 452 52.9
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.9e-101 371.7 465 54.0
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-100 371.3 452 55.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 8.8e-100 368.2 453 53.4
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.5e-99 367.5 454 54.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.5e-99 367.5 451 53.9
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.0e-99 367.1 455 53.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.3e-99 366.3 448 50.7
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.3e-99 366.3 482 52.9
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.3e-99 366.3 454 59.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 9.7e-99 364.8 488 51.6
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.3e-98 364.4 464 52.4
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.3e-98 364.4 487 50.7
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.7e-98 364.0 459 51.6
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.2e-98 363.6 523 46.7
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 6.3e-98 362.1 449 50.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.4e-97 360.9 509 55.0
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.8e-97 360.5 509 49.3
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.0e-96 357.1 452 52.2
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.7e-96 355.1 480 50.4
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-95 354.8 464 51.9
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.2e-95 353.6 455 53.0
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.9e-95 353.2 531 44.6
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.8e-95 352.8 484 49.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.8e-95 352.8 460 50.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 6.5e-95 352.1 454 56.8
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.1e-94 351.3 468 52.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.2e-93 347.8 473 50.3
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 2.7e-93 346.7 530 52.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 6.7e-92 342.0 456 51.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.5e-91 340.9 476 54.8
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.5e-91 340.9 459 55.3
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.7e-90 337.4 459 54.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 3.7e-90 336.3 506 46.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 6.3e-90 335.5 450 48.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.1e-89 334.7 456 53.9
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.4e-89 334.3 459 54.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 3.1e-89 333.2 501 43.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.3e-89 332.4 470 48.1
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 9.1e-89 331.6 459 47.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 9.1e-89 331.6 455 51.6
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.2e-88 331.3 463 49.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.0e-88 330.5 462 50.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.0e-87 328.2 483 46.0
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.7e-87 327.4 455 50.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 6.5e-87 325.5 461 52.1
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 8.5e-87 325.1 460 47.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.1e-86 324.7 455 47.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.2e-85 321.2 475 47.4
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.3e-84 317.0 421 54.4
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 5.2e-84 315.8 460 52.0
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 5.2e-84 315.8 504 44.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 4.4e-83 312.8 194 83.0
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.1e-81 308.1 427 49.2
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 4.5e-80 302.8 299 60.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.9e-80 302.4 461 44.0
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 2.2e-79 300.4 498 40.8
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.9e-78 297.4 449 46.8
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.5e-78 297.0 311 58.5
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.6e-77 293.1 169 87.0
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.0e-76 291.6 436 48.6
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.2e-75 288.1 439 49.9
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.8e-74 283.5 510 45.5
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.5e-72 276.2 485 47.6
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 8.6e-71 271.9 454 40.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.5e-70 271.2 439 44.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.5e-70 271.2 300 55.0
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.2e-69 268.1 476 50.4
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.8e-69 266.9 184 74.5
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.0e-68 263.1 418 46.9
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 6.8e-68 262.3 467 41.3
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.6e-67 260.4 468 43.6
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.6e-64 251.1 478 39.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.5e-64 250.0 417 42.4
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-57 228.4 386 47.7
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.6e-56 224.6 128 85.2
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.2e-50 204.1 168 67.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 4.9e-50 203.0 173 63.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-48 196.1 315 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.1e-45 187.6 421 38.2
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.7e-42 177.9 349 42.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.7e-39 167.9 529 31.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 5.2e-36 156.4 425 36.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.6e-35 152.5 418 35.2
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.9e-34 150.6 196 44.4
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 8.4e-34 149.1 172 48.3
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.3e-29 135.2 147 45.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.4e-26 122.9 346 32.1
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.9e-25 121.3 65 90.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.5e-19 101.7 97 58.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.3e-17 92.4 90 56.7
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.5e-16 90.5 52 84.6
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.3e-15 87.8 62 72.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.3e-15 87.8 62 72.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.9e-14 84.7 172 35.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 9.6e-14 82.4 49 77.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 3.7e-13 80.5 102 46.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 3.7e-13 80.5 102 46.1
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 6.2e-13 79.7 58 63.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 6.9e-12 76.3 96 46.9
Cfa022458 Carpinus fangiana HOM05D005375 ORTHO05D121393 7.4e-06 56.2 145 30.3
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 7.4e-06 56.2 115 29.6


User provided reference genes

Program Settings