Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 4.3e-161 571.2 286 100.0
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 5.5e-39 165.6 353 38.2
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 7.2e-39 165.2 365 37.5
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 2.6e-36 156.8 427 35.1
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 7.4e-36 155.2 342 38.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 7.4e-36 155.2 356 39.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 2.0e-33 147.1 370 34.3
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 4.5e-33 146.0 346 37.9
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 3.8e-32 142.9 367 34.9
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.5e-31 140.2 329 38.3
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.2e-31 139.8 329 38.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.5e-31 139.0 354 34.7
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 7.2e-31 138.7 370 35.7
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 8.0e-30 135.2 374 35.6
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 5.2e-29 132.5 332 36.1
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 2.0e-28 130.6 371 34.5
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.0e-28 130.6 322 37.3
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 4.4e-28 129.4 357 34.5
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.7e-27 127.5 326 33.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.7e-27 126.3 341 36.7
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.8e-27 125.9 314 38.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.1e-26 124.8 349 34.4
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 2.4e-26 123.6 302 36.8
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 3.1e-26 123.2 364 34.9
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.2e-25 121.3 353 32.9
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.6e-25 120.9 324 34.9
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.6e-25 120.9 372 33.6
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.6e-25 120.9 391 33.2
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 2.7e-25 120.2 359 33.4
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.5e-25 119.8 374 32.9
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.5e-25 119.8 340 32.4
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 7.7e-25 118.6 346 34.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.0e-24 118.2 347 35.2
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.7e-24 117.5 372 33.9
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.7e-24 117.5 313 35.5
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.7e-24 117.5 304 35.5
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 2.2e-24 117.1 345 33.0
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 2.5e-23 113.6 354 33.3
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 7.2e-23 112.1 341 32.8
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 7.2e-23 112.1 346 34.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.6e-22 110.9 348 35.3
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.1e-22 110.5 349 32.7
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 2.1e-22 110.5 379 32.5
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 4.7e-22 109.4 336 33.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 6.1e-22 109.0 332 34.0
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 6.1e-22 109.0 311 33.4
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.8e-21 107.5 335 34.6
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 2.3e-21 107.1 340 33.2
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.3e-21 107.1 303 34.0
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.0e-21 106.7 375 31.7
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.0e-21 106.7 303 34.0
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 5.2e-21 105.9 346 32.9
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 6.8e-21 105.5 343 35.0
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.5e-20 104.4 352 33.2
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 2.0e-20 104.0 326 35.0
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 4.4e-20 102.8 295 32.2
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 9.8e-20 101.7 324 34.3
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 9.8e-20 101.7 340 34.1
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 9.8e-20 101.7 349 34.7
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.3e-19 101.3 348 33.3
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 2.8e-19 100.1 328 34.5
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 2.8e-19 100.1 308 34.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.7e-19 99.8 334 33.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 4.8e-19 99.4 334 33.8
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 4.8e-19 99.4 331 33.5
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 4.8e-19 99.4 253 37.2
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 6.3e-19 99.0 317 32.2
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.3e-19 99.0 331 31.4
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 1.1e-18 98.2 331 33.5
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 2.4e-18 97.1 319 34.5
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 3.1e-18 96.7 345 32.5
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 4.1e-18 96.3 416 28.4
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 4.1e-18 96.3 429 29.1
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 5.4e-18 95.9 409 29.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 7.0e-18 95.5 330 32.7
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 9.1e-18 95.1 328 32.0
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.0e-16 91.7 367 32.4
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.7e-16 90.9 314 31.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 2.2e-16 90.5 404 27.7
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 3.8e-16 89.7 325 32.0
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.8e-16 89.7 440 26.8
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 8.5e-16 88.6 341 31.1
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.5e-15 87.8 419 28.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.5e-15 87.0 418 27.0
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 4.2e-15 86.3 429 29.6
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 4.2e-15 86.3 343 30.9
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 5.5e-15 85.9 328 30.8
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 9.5e-15 85.1 323 31.0
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 2.1e-14 84.0 324 29.9
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 3.6e-14 83.2 386 28.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 3.0e-13 80.1 332 29.8
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 5.2e-13 79.3 331 29.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 4.4e-12 76.3 424 27.1
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 4.4e-12 76.3 150 44.7
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 7.5e-12 75.5 424 27.1
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 9.8e-12 75.1 362 29.0
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 9.8e-12 75.1 220 34.5
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.7e-11 74.3 284 34.5
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 6.3e-11 72.4 141 37.6
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.1e-10 71.6 96 49.0
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.4e-10 71.2 389 28.8
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 3.1e-10 70.1 362 28.7
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 3.1e-10 70.1 283 31.4
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 4.1e-10 69.7 309 29.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 5.4e-10 69.3 356 27.2
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 7.0e-10 68.9 134 36.6
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 2.0e-09 67.4 421 25.7
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 4.5e-09 66.2 336 26.5
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.8e-08 63.2 297 32.0
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.8e-08 63.2 259 30.5
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 6.6e-08 62.4 153 35.9
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 1.1e-07 61.6 331 26.9
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 3.3e-07 60.1 155 34.2
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.3e-07 60.1 295 28.1
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 3.3e-07 60.1 109 44.0
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.6e-07 59.3 92 43.5
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 7.3e-07 58.9 298 30.9
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.2e-06 58.2 412 27.9
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 2.8e-06 57.0 377 26.5


User provided reference genes

Program Settings