Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 0.0e+00 1278.1 748 100.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 9.0e-275 950.3 758 78.2
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.3e-270 935.6 756 77.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.3e-268 929.9 745 77.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.1e-264 916.8 758 76.5
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.4e-264 916.4 760 76.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 6.7e-262 907.5 756 76.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.4e-259 899.0 755 75.0
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.4e-259 899.0 760 75.5
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 5.3e-259 897.9 758 74.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 5.5e-256 887.9 760 74.7
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 7.2e-256 887.5 641 71.9
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 7.2e-256 887.5 761 75.2
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-255 886.7 760 74.6
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.6e-255 886.3 760 74.6
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.6e-255 886.3 759 75.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.6e-255 886.3 759 75.9
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.1e-255 885.9 767 73.0
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 8.2e-252 874.0 800 60.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.3e-251 871.3 764 73.4
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 5.3e-251 871.3 760 73.9
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 6.9e-251 870.9 762 73.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.4e-250 868.6 758 74.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 7.7e-250 867.5 755 75.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.7e-249 866.3 753 72.5
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.7e-249 866.3 760 73.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.5e-249 864.4 785 72.1
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.9e-248 862.8 750 72.8
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.2e-247 860.1 759 72.2
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.0e-246 855.5 754 73.3
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.1e-245 853.6 781 71.3
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-245 852.8 647 68.8
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 4.4e-245 851.7 836 68.5
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.7e-244 849.7 759 71.1
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.7e-244 848.6 768 71.1
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.8e-244 848.2 755 72.5
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 6.3e-244 847.8 754 71.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.3e-243 844.7 756 73.3
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-243 844.0 754 72.8
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-243 844.0 754 72.8
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.0e-242 842.8 755 72.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 4.5e-242 841.6 757 71.2
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-242 841.3 755 72.7
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.2e-241 839.3 782 69.7
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.5e-240 836.6 767 70.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.1e-239 832.8 758 71.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.1e-239 832.8 761 71.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.7e-239 832.4 755 73.0
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.0e-238 830.5 764 69.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.4e-238 830.1 749 70.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.0e-238 828.9 755 69.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 5.2e-238 828.2 805 60.6
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 6.7e-238 827.8 757 70.7
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.1e-237 827.0 762 69.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 4.4e-237 825.1 797 66.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 7.5e-237 824.3 768 69.7
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.2e-236 822.8 761 71.0
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.8e-236 822.4 758 70.8
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.8e-236 822.4 768 69.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.8e-235 819.7 854 64.1
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.8e-235 819.7 756 71.8
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 3.1e-235 818.9 756 72.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 9.1e-235 817.4 795 58.7
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 2.0e-234 816.2 756 71.3
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 5.9e-234 814.7 753 71.0
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.3e-233 813.5 761 71.0
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.7e-233 813.1 754 71.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 5.0e-233 811.6 786 68.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.2e-232 808.9 758 70.2
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 3.2e-232 808.9 647 68.0
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.6e-231 806.6 752 71.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 3.6e-231 805.4 771 68.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 4.0e-230 802.0 758 68.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 5.7e-229 798.1 782 65.9
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.2e-228 796.2 758 69.7
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.2e-228 796.2 758 69.7
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 7.0e-227 791.2 788 60.8
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.0e-226 789.6 759 68.2
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 2.0e-226 789.6 796 65.8
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 3.8e-225 785.4 761 68.9
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.6e-223 780.0 754 68.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 6.1e-223 778.1 804 65.4
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 8.0e-223 777.7 761 68.3
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.8e-222 776.5 755 66.9
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.0e-221 773.1 759 67.3
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.6e-221 772.7 843 64.1
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 9.8e-221 770.8 761 67.0
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 9.8e-221 770.8 761 68.1
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.5e-218 762.3 759 67.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.9e-217 759.2 759 66.4
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 5.0e-217 758.4 687 71.8
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 5.6e-216 755.0 755 66.9
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-215 753.8 765 66.0
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 2.1e-215 753.1 761 66.6
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.0e-214 750.7 748 66.6
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.5e-210 735.7 756 65.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 9.5e-208 727.6 766 63.6
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 8.0e-207 724.5 754 65.1
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 4.0e-206 722.2 761 65.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 7.0e-203 711.4 791 63.2
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.6e-201 704.9 779 53.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 4.4e-197 692.2 791 60.9
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.5e-192 676.4 811 60.2
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.2e-189 667.5 754 60.7
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.7e-185 653.7 1246 44.7
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 8.6e-185 651.4 762 57.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 5.6e-184 648.7 567 64.2
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.7e-178 629.8 551 77.1
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.0e-177 626.3 727 62.3
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.9e-164 583.2 771 54.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.1e-155 554.7 783 53.9
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.2e-155 552.7 455 65.3
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.0e-153 548.1 754 56.9
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 3.0e-153 546.6 776 57.7
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.4e-147 527.7 767 56.1
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.1e-142 511.5 776 53.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.1e-137 492.7 541 52.9
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.7e-119 434.5 443 54.0
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.8e-111 407.1 650 41.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 7.0e-110 402.5 388 58.0
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.3e-108 397.5 365 80.0
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.5e-107 394.8 368 81.0
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.3e-105 387.5 390 76.9
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.3e-97 360.9 304 90.1
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 4.3e-91 340.1 384 52.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.3e-79 302.0 334 51.8
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.8e-73 281.6 763 32.9
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 6.4e-71 273.1 490 38.8
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.9e-68 263.8 197 64.0
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-68 263.5 315 50.8
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 8.7e-68 262.7 845 40.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-61 241.1 166 71.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 9.9e-56 222.6 484 34.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.9e-54 218.4 724 29.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 4.3e-51 207.2 150 69.3
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-42 177.2 231 46.3
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 7.6e-40 169.9 231 45.0
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-38 165.6 98 84.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.7e-36 156.4 90 85.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-33 148.3 232 40.9
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-33 147.9 82 90.2
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.7e-31 142.1 147 52.4
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-31 141.7 82 84.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-29 135.6 84 82.1
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.6e-29 135.6 142 55.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-27 129.4 93 74.2
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-26 124.8 102 66.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-26 124.0 67 85.1
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-25 122.5 163 47.2
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 1.2e-24 119.4 109 56.0
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.9e-23 114.8 118 57.6
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-23 113.6 70 80.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.5e-22 110.5 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-21 109.4 61 85.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.1e-21 108.6 155 94.8
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-21 107.8 60 88.3
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.0e-20 104.8 197 36.0
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.0e-19 102.1 160 49.4
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.7e-18 99.0 154 90.9
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.1e-17 94.4 143 46.2
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-12 79.3 173 36.4
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-11 75.9 96 43.8
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-11 75.5 60 70.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.6e-11 75.1 252 28.6
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-08 63.9 54 51.9
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.3e-07 62.8 63 55.6
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.3e-07 62.8 41 73.2
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-07 62.4 31 93.5
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 6.5e-07 60.5 31 90.3
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 8.5e-07 60.1 31 87.1
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 5.5e-06 57.4 31 87.1
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 9.4e-06 56.6 30 86.7


User provided reference genes

Program Settings