Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 3.2e-156 555.1 286 100.0
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 6.4e-104 381.3 292 66.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.1e-98 364.0 284 64.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.6e-97 359.4 289 66.4
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 7.6e-97 357.8 292 62.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.1e-95 352.1 279 62.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.4e-95 351.7 286 61.5
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.7e-93 346.7 287 62.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.3e-93 346.3 288 61.5
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.3e-93 346.3 283 61.5
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.5e-92 343.6 271 62.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.5e-92 342.8 258 65.5
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.3e-92 342.4 286 62.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.3e-92 341.3 284 61.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.2e-91 340.5 316 57.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.2e-91 340.5 295 58.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.8e-91 339.3 305 59.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.8e-90 334.7 289 60.2
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.8e-90 334.7 287 59.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.0e-89 333.2 265 63.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 5.8e-89 331.6 266 63.2
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.7e-88 330.1 316 55.1
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.8e-88 328.9 282 58.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.4e-88 328.2 272 59.2
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-87 327.0 286 55.9
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.4e-87 326.2 272 58.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.2e-87 325.9 275 58.9
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.2e-87 325.9 295 54.6
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.2e-87 325.5 275 58.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.6e-86 323.6 287 58.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.6e-86 323.6 296 56.8
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.5e-86 322.4 287 58.5
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.6e-85 318.2 280 59.3
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.5e-84 316.2 275 56.7
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 3.3e-84 315.8 270 57.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.8e-83 312.0 289 58.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 6.2e-83 311.6 251 58.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 8.1e-83 311.2 277 56.7
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.4e-82 310.5 273 55.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.8e-82 310.1 292 54.8
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.8e-82 310.1 269 57.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 4.0e-82 308.9 262 56.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.9e-82 308.1 271 58.3
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.0e-82 307.8 287 57.1
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.0e-81 306.6 267 55.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 7.6e-81 304.7 256 60.5
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 9.9e-81 304.3 346 48.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.3e-80 303.9 250 57.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 6.4e-80 301.6 275 55.3
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 8.4e-80 301.2 280 51.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-79 300.4 304 51.6
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.9e-79 300.1 264 57.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.2e-79 299.3 293 54.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 7.1e-79 298.1 275 54.9
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.1e-78 296.6 294 50.7
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.0e-77 294.3 251 57.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.0e-77 292.7 294 51.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.9e-77 292.4 267 56.6
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.9e-77 292.4 292 51.0
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.9e-77 292.4 259 56.4
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 5.1e-77 292.0 272 52.6
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 8.7e-77 291.2 268 56.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.5e-76 289.7 404 41.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 5.6e-76 288.5 293 51.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-75 287.3 293 53.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-75 287.0 286 54.5
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.6e-75 287.0 244 57.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-75 286.6 292 53.1
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.6e-75 285.8 291 52.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 6.2e-75 285.0 309 50.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 6.2e-75 285.0 312 51.6
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.8e-74 283.5 252 57.9
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.4e-74 283.1 296 52.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.1e-74 282.7 290 52.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.1e-74 282.7 272 54.0
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 4.0e-74 282.3 289 52.6
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 5.3e-74 282.0 296 51.7
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.0e-74 281.2 284 51.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.5e-73 280.4 277 50.9
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.6e-73 279.6 285 48.4
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.4e-73 279.3 304 49.3
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.5e-73 278.9 280 52.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-72 276.9 259 54.4
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.9e-71 273.5 256 55.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.2e-71 272.7 293 49.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.2e-71 272.3 295 50.5
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.7e-70 269.6 244 56.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 7.9e-70 268.1 289 49.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.8e-69 266.9 251 50.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.7e-69 265.0 251 49.0
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.3e-68 262.3 293 49.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.3e-68 262.3 286 51.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 5.6e-68 261.9 251 47.8
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 5.6e-68 261.9 251 47.8
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 7.4e-68 261.5 181 68.5
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 7.4e-68 261.5 288 49.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.8e-67 259.6 292 49.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.8e-67 259.6 288 49.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.7e-67 259.2 288 49.3
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 4.8e-67 258.8 288 49.3
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.2e-67 258.5 289 48.4
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.4e-66 257.3 341 44.0
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.0e-65 253.4 286 50.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 3.4e-65 252.7 284 49.3
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 5.8e-65 251.9 344 41.9
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.9e-63 246.9 284 44.7
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.9e-63 246.9 284 44.7
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-60 237.3 174 65.5
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.9e-60 236.9 284 43.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.3e-60 236.1 230 53.5
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 4.8e-59 232.3 291 45.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 6.3e-59 231.9 174 64.9
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.0e-57 226.9 287 44.6
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.7e-54 216.5 215 53.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 3.7e-51 206.1 216 51.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-50 204.5 140 67.9
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.8e-50 203.8 209 50.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.9e-49 198.7 282 44.0
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.4e-44 182.6 181 53.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.5e-41 174.1 266 40.6
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.7e-41 171.8 165 50.9
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-39 167.9 285 36.8
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.6e-38 164.1 257 38.9
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-37 161.4 180 47.2
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.3e-35 152.1 178 46.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 8.2e-35 151.8 215 40.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-34 151.0 124 59.7
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.1e-34 149.4 346 31.2
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.2e-33 147.9 103 66.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.6e-33 147.5 150 49.3
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.1e-31 141.4 128 53.1
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-30 137.9 165 47.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 3.0e-29 133.3 244 33.2
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.0e-29 133.3 448 28.3
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.5e-28 131.0 255 31.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.2e-27 125.2 236 37.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 8.2e-27 125.2 193 42.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 4.1e-26 122.9 284 29.6
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 5.5e-23 112.5 258 29.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.5e-23 112.5 178 37.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.6e-22 109.8 86 61.6
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.7e-22 109.4 263 32.3
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-20 104.0 141 41.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 7.0e-18 95.5 141 39.0
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 7.0e-18 95.5 141 39.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.1e-18 95.1 109 50.5
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.8e-16 89.7 61 68.9
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.5e-15 87.8 249 28.5
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 9.5e-15 85.1 61 67.2
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.8e-14 83.6 131 34.4
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.8e-14 83.6 62 58.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 8.0e-14 82.0 261 28.0
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.3e-13 80.5 119 39.5
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.0e-13 79.7 132 40.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.2e-13 79.3 61 63.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 3.4e-12 76.6 97 39.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.4e-10 71.2 80 47.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 7.8e-09 65.5 109 43.1
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 2.9e-08 63.5 66 51.5
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.9e-08 63.5 38 73.7


User provided reference genes

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