Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 0.0e+00 1667.5 851 100.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.3e-226 789.6 996 48.5
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.1e-223 779.2 977 49.0
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 2.3e-218 763.1 842 53.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.0e-217 760.0 792 54.3
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.4e-207 726.5 850 49.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.6e-206 723.8 866 49.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 9.5e-204 714.5 811 51.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.1e-203 711.8 862 48.8
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 6.1e-203 711.8 861 48.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.0e-203 711.4 861 48.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.0e-202 711.1 866 48.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 4.0e-202 709.1 1030 44.9
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 8.9e-202 708.0 939 47.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 5.7e-201 705.3 857 50.5
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 5.7e-201 705.3 817 50.1
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.0e-198 696.8 870 48.6
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.9e-197 692.6 844 49.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 7.3e-196 688.3 883 47.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 7.3e-196 688.3 858 47.9
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.8e-195 686.4 840 48.6
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.6e-195 686.0 844 48.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.4e-193 679.1 838 47.7
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.2e-192 676.8 844 48.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.6e-190 670.6 840 47.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.5e-190 669.5 810 48.4
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 6.0e-190 668.7 853 47.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.8e-190 668.3 921 46.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.9e-188 663.7 857 48.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 6.2e-187 658.7 839 46.7
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 8.0e-187 658.3 810 47.9
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 6.8e-186 655.2 863 45.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.9e-184 649.8 812 47.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.9e-184 649.8 838 46.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.7e-182 643.3 803 46.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 5.1e-181 639.0 850 46.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.6e-181 638.6 851 45.8
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 9.5e-180 634.8 832 46.4
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-179 634.4 805 47.1
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.1e-179 631.7 977 43.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.3e-172 609.8 859 44.9
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.6e-172 609.0 857 45.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.6e-169 600.1 846 45.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 3.4e-169 599.7 840 43.1
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.2e-168 597.0 855 43.3
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.4e-167 593.6 847 42.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.4e-167 592.4 846 43.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.5e-164 584.3 662 51.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.5e-164 583.6 845 44.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.0e-162 576.2 847 44.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 5.8e-161 572.4 829 43.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.9e-160 570.1 846 41.5
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 8.4e-160 568.5 800 44.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.2e-159 566.6 844 41.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.5e-156 557.8 788 44.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.4e-154 551.2 806 40.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.4e-154 550.4 801 44.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.2e-153 548.1 806 40.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 3.8e-152 543.1 921 40.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 6.4e-152 542.3 861 41.9
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 9.3e-151 538.5 818 40.3
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.1e-150 537.3 863 40.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.3e-149 534.6 821 40.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.3e-149 533.9 854 41.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 8.7e-149 531.9 843 41.3
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.3e-148 530.0 568 52.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 9.3e-143 511.9 844 39.1
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.3e-141 508.1 873 42.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 4.3e-140 503.1 847 39.7
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.7e-140 502.7 815 40.6
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-139 501.5 821 40.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.8e-139 499.6 827 39.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.4e-138 498.0 830 39.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.3e-138 496.1 881 38.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.2e-137 495.0 874 38.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.5e-137 494.6 857 39.8
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.8e-137 492.7 848 39.2
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.0e-136 491.9 822 38.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.9e-136 490.3 854 38.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.1e-134 482.6 830 36.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 7.9e-134 482.3 861 38.1
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.3e-133 480.7 844 36.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 7.4e-132 475.7 856 37.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.1e-130 470.3 689 45.9
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 6.9e-130 469.2 917 36.3
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.9e-128 463.8 812 37.3
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.8e-128 463.4 823 37.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-127 461.8 846 36.9
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.7e-126 457.2 839 36.7
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.8e-123 447.2 863 35.9
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 9.4e-119 432.2 799 36.5
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 7.0e-114 416.0 768 39.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.6e-113 414.1 825 35.2
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 5.9e-113 412.9 829 34.0
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.0e-109 402.1 737 39.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-107 395.2 634 41.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 9.1e-106 389.0 816 35.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.9e-104 384.0 830 32.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.8e-98 364.8 499 44.1
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-95 355.5 671 37.0
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.2e-95 354.0 579 41.3
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.7e-94 350.9 528 41.7
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.6e-92 344.4 856 32.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-89 335.5 562 40.6
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.9e-88 330.9 486 43.6
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.8e-85 319.7 503 41.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.3e-83 315.5 455 46.2
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.4e-82 312.0 692 33.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-81 308.1 476 41.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.3e-80 305.4 487 42.5
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-80 305.1 501 39.9
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.7e-80 305.1 456 43.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.6e-80 303.1 461 42.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.3e-77 294.7 492 40.9
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.2e-76 292.4 518 38.8
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.1e-74 285.8 512 39.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.4e-74 285.4 597 34.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.9e-74 285.0 502 39.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.9e-74 285.0 502 39.2
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.2e-73 282.3 829 29.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-73 282.0 484 39.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.7e-73 281.2 833 28.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.3e-72 278.1 814 31.2
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.9e-72 277.3 512 39.1
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.6e-72 276.2 430 41.2
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-70 272.3 570 36.8
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.3e-69 268.1 860 29.3
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.2e-65 255.8 501 34.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.5e-65 254.2 664 32.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.8e-65 253.1 550 34.7
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.3e-64 252.3 511 34.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-64 252.3 549 34.8
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.3e-64 251.5 529 33.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.3e-63 247.7 858 28.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-62 245.4 366 40.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.5e-60 238.8 795 28.9
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.4e-60 237.3 502 33.7
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.3e-59 235.7 423 38.1
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 9.6e-55 219.5 298 46.3
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.0e-52 211.8 466 33.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.1e-49 201.8 302 44.0
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 9.6e-47 193.0 623 29.9
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.2e-46 190.3 193 55.4
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.8e-45 188.7 614 31.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.9e-39 168.7 505 27.7
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.1e-38 165.2 847 24.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.2e-38 163.7 101 69.3
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 7.1e-34 150.2 103 62.1
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.1e-31 142.9 530 23.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.1e-30 138.7 409 30.8
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.1e-29 134.8 411 31.1
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.7e-24 117.1 151 37.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-20 106.3 103 51.5
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.9e-19 101.7 173 40.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.4e-13 82.0 80 42.5
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.6e-12 78.6 88 43.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 7.7e-12 77.0 84 45.2
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.5e-11 73.9 85 38.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.1e-07 63.2 117 36.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-07 61.6 128 29.7
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-06 59.3 50 52.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-06 59.3 56 46.4
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 4.8e-06 57.8 61 42.6


User provided reference genes

Program Settings