Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.9e-105 385.2 188 100.0
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.9e-105 385.2 188 100.0
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 91.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 90.4
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.5e-98 362.8 188 90.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.5e-98 362.8 188 90.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.4e-98 361.7 188 89.9
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.4e-98 361.7 188 89.9
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.2e-97 359.0 188 89.9
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.8e-97 358.2 188 89.9
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 6.5e-97 357.5 188 89.9
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.2e-96 355.1 188 89.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 5.5e-96 354.4 188 89.4
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 7.2e-96 354.0 187 89.8
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.0e-94 348.6 188 85.6
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.9e-94 348.2 188 86.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.9e-94 348.2 188 85.1
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 87.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 86.2
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 8.8e-94 347.1 188 87.2
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.5e-93 346.3 179 89.9
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 85.1
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 84.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 86.7
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 85.6
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 85.6
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 86.7
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 86.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 87.2
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 85.6
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 85.6
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 85.6
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 5.7e-93 344.4 188 85.6
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 84.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 7.4e-93 344.0 185 87.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.7e-93 343.6 185 85.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 9.7e-93 343.6 185 85.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.2
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 86.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 86.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 8.2e-92 340.5 185 85.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.2e-92 340.5 185 85.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 85.6
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.1e-91 340.1 185 85.4
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 83.5
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 83.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 83.5
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-91 338.6 190 84.7
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.1e-91 338.6 190 84.7
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 84.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.0
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.5
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 81.9
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.6
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 82.4
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 81.9
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 83.0
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 83.0
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.5
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 83.0
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.0
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.5
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.6
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 83.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.4
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 84.6
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.4
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 83.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 83.0
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 7.9e-87 323.9 180 84.4
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 83.0
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 83.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 83.0
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.9
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.2e-86 321.2 174 86.8
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 79.8
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 81.4
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 79.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 78.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 78.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 78.2
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 77.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 78.7
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.3e-81 306.6 180 78.9
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.2e-81 305.8 169 82.8
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 75.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 77.2
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 79.4
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 76.6
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 76.1
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 79.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 78.7
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 77.2
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 78.3
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 4.0e-78 295.0 189 76.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 6.7e-78 294.3 188 75.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.2e-77 293.5 188 74.5
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 7.5e-77 290.8 190 73.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.3e-76 287.7 190 72.6
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 2.2e-73 279.3 188 73.9
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.1e-72 276.9 188 73.4
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 4.2e-72 275.0 188 67.0
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 5.5e-72 274.6 177 75.1
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 68.1
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 72.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.4e-70 270.0 188 71.8
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 67.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 6.8e-70 267.7 179 71.5
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 6.8e-70 267.7 188 67.6
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 6.8e-70 267.7 188 67.6
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.0e-69 266.2 189 66.7
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 4.4e-69 265.0 182 70.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.7e-68 261.9 187 65.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.7e-66 255.8 187 63.1
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 5.9e-66 254.6 187 64.7
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 5.5e-64 248.1 165 76.4
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 3.7e-60 235.3 188 57.4
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.0e-58 229.6 177 61.0
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.0e-54 217.2 188 59.6
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.2e-50 203.8 121 78.5
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 3.1e-46 189.1 187 50.3
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.2e-46 188.3 171 60.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.4e-45 185.3 188 54.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 4.4e-45 185.3 109 78.9
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 3.7e-44 182.2 115 74.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.6e-42 176.8 122 73.8
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.3e-40 169.1 85 94.1
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 9.9e-37 157.5 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.4e-30 137.1 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.7e-26 122.9 92 66.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.7e-26 122.9 64 85.9
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 2.7e-10 69.7 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.4e-06 56.6 39 66.7


User provided reference genes

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