Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.8e-219 765.8 428 100.0
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.2e-154 550.4 437 68.2
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.3e-153 547.0 439 69.2
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.5e-152 542.7 433 67.0
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.0e-150 535.8 442 70.6
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.6e-149 532.7 442 70.6
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.4e-149 531.9 433 66.1
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.4e-149 531.9 433 66.1
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.5e-149 531.2 433 66.1
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.7e-148 530.0 433 67.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 8.2e-148 527.7 441 66.4
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-147 527.3 433 65.6
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-147 526.9 433 65.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 3.1e-147 525.8 445 66.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.1e-147 525.8 432 65.7
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.1e-147 525.8 441 65.5
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.1e-147 525.4 441 65.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 4.1e-147 525.4 446 69.3
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 9.1e-147 524.2 438 66.9
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.7e-146 522.7 440 66.1
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.0e-145 520.8 455 64.2
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 6.5e-145 518.1 440 65.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.5e-144 516.9 439 67.7
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 7.2e-144 514.6 442 65.8
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 7.2e-144 514.6 436 65.6
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 9.4e-144 514.2 449 69.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 9.4e-144 514.2 440 65.2
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.1e-143 513.1 458 67.2
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-143 513.1 455 69.2
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.7e-143 511.9 444 67.6
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.4e-142 510.4 443 64.1
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.8e-142 510.0 442 64.5
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 5.2e-142 508.4 442 67.9
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 8.8e-142 507.7 443 64.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.2e-141 507.3 436 66.1
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.5e-141 506.9 489 60.9
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.0e-141 506.5 439 69.9
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.4e-141 505.8 444 64.9
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.8e-141 504.2 434 65.9
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.7e-140 502.3 443 66.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.7e-140 502.3 445 63.4
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 8.3e-140 501.1 438 67.6
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 8.3e-140 501.1 438 67.6
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.4e-139 499.6 446 69.1
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.4e-139 499.6 444 67.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.4e-139 498.4 441 63.3
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.0e-139 498.0 444 66.7
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.6e-138 496.9 471 61.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-138 496.9 427 64.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 3.5e-138 495.7 437 68.9
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.5e-138 495.7 450 63.1
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.5e-138 495.7 449 67.9
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 4.5e-138 495.4 439 64.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 7.7e-138 494.6 442 63.6
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.3e-137 493.8 451 63.0
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.7e-137 493.4 432 68.8
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 6.6e-137 491.5 441 62.8
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 6.6e-137 491.5 448 61.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.1e-136 490.7 440 62.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.9e-136 490.0 442 67.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 4.2e-136 488.8 487 58.1
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.5e-136 488.4 440 62.3
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 7.2e-136 488.0 437 63.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 9.5e-136 487.6 438 62.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.8e-135 486.1 436 65.6
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 6.1e-135 485.0 440 61.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.0e-134 484.2 440 62.0
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 2.3e-134 483.0 448 65.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 3.0e-134 482.6 439 62.2
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 6.8e-134 481.5 451 61.2
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.4e-133 479.2 438 64.6
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.4e-133 479.2 447 60.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 4.4e-133 478.8 437 62.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.3e-132 477.2 431 64.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.4e-131 473.8 434 62.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.4e-131 473.8 436 64.0
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.8e-131 473.4 423 68.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.1e-131 472.2 436 64.7
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 4.1e-131 472.2 438 66.9
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 9.2e-131 471.1 448 59.8
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.7e-130 469.5 423 62.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.7e-129 466.8 435 61.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.3e-129 466.5 448 59.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.9e-128 463.4 437 65.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 5.6e-128 461.8 434 63.1
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 7.3e-128 461.5 438 65.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.6e-127 460.3 491 56.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 6.8e-126 454.9 453 58.9
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.8e-126 454.9 444 59.5
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 8.9e-126 454.5 453 58.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-125 453.8 453 58.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.5e-125 453.8 453 58.7
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.4e-125 452.6 469 56.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 9.8e-125 451.1 451 58.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 9.8e-125 451.1 440 64.1
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.7e-124 450.3 432 65.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 4.9e-124 448.7 459 62.3
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.9e-123 446.8 436 62.8
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.7e-121 440.3 422 64.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 6.6e-121 438.3 429 63.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.1e-119 433.3 444 60.8
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 5.4e-115 418.7 442 60.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 7.0e-115 418.3 443 60.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 7.0e-115 418.3 439 61.3
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.5e-112 410.6 433 60.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.1e-107 394.4 433 61.2
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.2e-107 391.3 436 51.8
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.0e-105 387.9 437 56.3
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.6e-103 380.6 437 56.5
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 6.8e-102 375.2 374 64.4
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.6e-101 373.2 381 55.4
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.7e-100 370.5 444 56.5
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.2e-100 370.2 316 63.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.9e-100 369.8 381 57.7
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.9e-99 367.1 319 72.4
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.1e-95 353.6 370 63.2
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.1e-94 349.7 466 48.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.3e-88 329.3 470 49.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.2e-85 321.2 427 50.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 9.9e-85 318.2 503 43.9
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.0e-81 308.1 442 47.1
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.9e-81 306.2 283 62.2
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.4e-78 297.0 282 61.3
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.1e-70 271.6 214 70.1
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.3e-64 249.6 440 43.9
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.8e-63 246.1 440 43.9
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.9e-60 236.9 169 69.8
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.5e-53 214.5 133 80.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.7e-50 203.0 349 42.4
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 6.7e-49 199.1 262 49.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 6.7e-49 199.1 262 49.2
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.2e-43 180.3 294 43.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 5.5e-35 152.9 128 59.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-34 151.0 191 50.3
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.7e-34 150.6 280 43.6
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.7e-32 142.9 234 45.3
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 4.1e-30 136.7 74 86.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 9.1e-30 135.6 69 92.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.5e-29 133.7 173 49.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.5e-29 133.3 79 83.5
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 6.1e-26 122.9 68 83.8
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 6.8e-25 119.4 125 50.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 9.8e-24 115.5 68 80.9
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 9.1e-22 109.0 150 42.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.1e-22 109.0 92 66.3
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.2e-21 108.6 153 41.2
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.0e-21 107.8 133 53.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 3.8e-20 103.6 70 71.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 3.0e-17 94.0 447 28.6
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 7.0e-14 82.8 91 56.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.9e-12 77.4 62 64.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 5.6e-11 73.2 69 60.9
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 3.4e-08 63.9 129 43.4


User provided reference genes

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