Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1262.7 637 100.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1188.7 637 92.2
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1185.2 637 91.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 637 92.5
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1184.5 637 91.5
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1183.7 637 91.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1182.2 637 91.5
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1181.4 637 92.0
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1180.6 637 92.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 637 90.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 636 91.8
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 633 92.3
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 635 91.8
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 91.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 637 91.1
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 637 91.4
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 637 91.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 637 90.7
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 637 91.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 637 90.3
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 635 91.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 633 91.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 637 91.1
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 635 91.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 637 90.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 631 91.1
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 631 91.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1167.1 633 91.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 647 90.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 637 91.8
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 634 91.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 637 90.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 637 90.4
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 635 89.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 637 90.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 635 90.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 637 90.4
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 635 90.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 637 89.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 634 90.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 635 89.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 637 90.3
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 635 90.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 635 89.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 633 89.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 637 90.1
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 637 89.2
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 631 90.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 633 90.0
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 637 89.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 636 89.0
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 631 90.3
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 634 90.1
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 633 89.7
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 637 89.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 88.5
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 89.3
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 630 89.0
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 634 88.6
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 633 89.4
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 637 88.2
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 633 89.4
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 637 88.2
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 633 89.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 628 90.4
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 633 89.1
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 634 88.0
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 632 88.9
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 635 87.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 630 88.7
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 664 85.4
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 630 88.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 630 88.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 630 88.6
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 88.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 88.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 88.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 88.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 630 88.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 630 88.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 635 88.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 630 88.1
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1129.8 630 87.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 630 86.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 632 86.7
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 637 87.9
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 635 87.2
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 630 87.0
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 630 86.7
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 632 86.4
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 632 88.4
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 637 86.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 637 86.2
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 634 86.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 633 87.4
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 634 85.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1095.1 647 85.3
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 630 85.4
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1087.0 628 84.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1081.2 628 83.9
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.4e-312 1074.7 628 83.4
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.1e-308 1061.2 582 89.9
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 3.9e-303 1044.3 631 81.1
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.4e-289 999.2 631 77.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.5e-286 989.2 541 90.8
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 3.3e-286 988.0 534 91.6
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 5.9e-283 977.2 534 89.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.0e-271 938.3 648 73.0
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 6.3e-269 930.6 635 74.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.0e-267 925.6 629 73.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.3e-263 912.1 499 90.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.4e-260 902.1 649 71.0
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.1e-248 862.4 503 86.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 3.6e-248 861.7 634 72.4
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 3.4e-246 855.1 503 85.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 8.6e-242 840.5 635 71.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.3e-234 815.8 638 65.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 5.0e-234 814.7 497 81.5
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-225 786.9 638 62.5
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.1e-203 713.0 444 80.9
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.9e-191 671.4 533 67.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 6.5e-181 638.3 643 52.4
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.3e-177 625.5 443 73.1
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.0e-175 619.0 354 86.2
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.0e-165 585.5 411 73.2
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 3.6e-163 579.3 315 91.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 5.0e-149 532.3 296 88.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 8.8e-138 495.0 271 89.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.4e-114 417.9 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.7e-96 357.8 201 86.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.4e-88 329.3 240 68.8
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.7e-86 323.9 183 87.4
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.4e-81 307.0 231 67.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.5e-76 291.6 163 85.9
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.5e-76 290.8 637 34.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.1e-74 283.9 163 84.7
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.1e-59 234.6 273 49.8
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 6.7e-53 213.0 230 54.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.3e-45 188.0 103 88.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.1e-42 177.2 103 82.5
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 8.5e-40 169.5 99 83.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.5e-39 167.9 158 60.1
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.6e-38 165.2 104 75.0
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.6e-36 157.9 86 84.9
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.3e-36 157.5 90 86.7
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.8e-35 154.5 91 84.6
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 8.2e-35 152.9 91 83.5
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.2e-33 149.1 125 62.4
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.7e-32 145.2 74 89.2
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.6e-20 104.8 53 94.3
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 5.7e-20 103.6 116 50.0
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 4.1e-18 97.4 60 78.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.7e-17 94.7 63 69.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.0e-16 92.8 51 84.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.3e-16 92.4 70 62.9
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.9e-15 88.6 49 83.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 5.7e-12 77.0 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 7.7e-09 66.6 43 72.1


User provided reference genes

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