Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.1e-289 997.3 479 100.0
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.9e-263 911.0 479 89.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 8.6e-263 909.8 479 88.3
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 9.5e-262 906.4 483 88.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 4.7e-261 904.0 480 88.8
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 3.2e-257 891.3 479 86.4
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 5.1e-255 884.0 478 86.6
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.9e-254 882.1 477 87.2
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.5e-254 881.7 479 86.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 4.3e-254 880.9 478 86.8
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 4.3e-254 880.9 480 86.7
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.3e-254 880.2 480 86.2
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 6.2e-253 877.1 478 86.2
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.4e-252 875.2 480 85.6
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.1e-252 874.8 470 87.4
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.1e-252 874.8 478 86.6
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.3e-252 874.0 483 86.7
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 5.3e-252 874.0 477 85.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.2e-251 872.8 478 85.8
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.6e-251 871.7 485 85.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.4e-251 871.3 478 85.8
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 7.6e-251 870.2 477 85.5
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-250 868.2 481 85.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-250 868.2 481 85.4
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 3.8e-250 867.8 478 84.9
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.9e-249 865.5 478 86.0
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 2.4e-249 865.1 480 85.6
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 5.4e-249 864.0 478 84.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 7.1e-249 863.6 477 84.1
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 7.1e-249 863.6 477 84.7
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.2e-248 862.8 479 84.8
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-248 862.4 472 85.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.1e-248 862.1 483 84.7
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 7.8e-248 860.1 472 84.7
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.0e-247 859.8 477 83.2
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.7e-247 859.0 472 84.5
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.9e-247 857.8 472 84.5
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 5.1e-247 857.4 477 83.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 8.7e-247 856.7 479 84.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.9e-246 855.5 480 85.4
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 2.5e-246 855.1 478 84.1
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-246 855.1 492 82.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 4.3e-246 854.4 478 83.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 5.6e-246 854.0 478 85.4
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 7.3e-246 853.6 479 83.3
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 7.3e-246 853.6 478 82.8
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 7.3e-246 853.6 477 83.4
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 9.6e-246 853.2 479 83.7
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 9.6e-246 853.2 480 84.6
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.3e-245 852.8 477 83.4
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.8e-245 851.7 479 83.9
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 3.6e-245 851.3 485 82.7
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.8e-245 850.9 478 83.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 6.2e-245 850.5 472 84.1
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 8.1e-245 850.1 472 84.3
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.4e-244 849.4 472 85.4
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.4e-244 849.4 471 84.9
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.1e-244 848.2 471 84.7
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 3.1e-244 848.2 494 81.6
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 4.0e-244 847.8 459 86.9
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 9.0e-244 846.7 480 83.8
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 2.0e-243 845.5 471 83.7
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.6e-243 845.1 479 83.7
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.6e-243 845.1 445 88.8
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 4.5e-243 844.3 478 82.4
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 7.6e-243 843.6 480 83.8
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 9.9e-243 843.2 478 82.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.3e-242 842.8 478 82.8
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.7e-242 842.4 478 82.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.7e-242 842.4 478 82.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.9e-242 841.6 478 82.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.8e-242 841.3 478 84.5
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 3.8e-242 841.3 478 82.6
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 3.8e-242 841.3 478 82.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.9e-242 840.9 441 88.7
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.9e-242 840.9 478 83.3
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.1e-241 839.7 480 84.0
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.1e-241 839.7 472 83.7
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.4e-241 839.3 478 82.2
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.9e-241 839.0 475 84.4
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 4.2e-241 837.8 481 83.2
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 5.4e-241 837.4 479 81.8
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.2e-240 836.3 485 81.6
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.6e-240 835.9 481 82.1
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 6.0e-240 833.9 486 81.3
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.0e-239 833.2 469 82.9
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.3e-239 832.8 479 82.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.3e-239 832.0 478 82.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.5e-238 829.3 479 81.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.3e-237 826.2 486 80.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.7e-237 824.7 481 80.9
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 6.2e-237 823.9 480 80.4
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.8e-236 822.4 438 87.0
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 6.9e-236 820.5 458 84.5
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 7.6e-235 817.0 474 83.3
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 1.3e-234 816.2 461 82.2
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.9e-234 815.1 456 82.9
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.9e-233 812.4 502 78.7
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-230 802.0 503 78.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.0e-226 790.0 479 79.1
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.9e-226 788.5 473 78.2
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.2e-224 783.1 507 76.1
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.0e-219 765.8 455 80.7
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.7e-216 755.4 480 76.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.6e-216 755.0 480 76.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.2e-213 745.7 502 74.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.1e-209 733.4 481 74.6
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 5.7e-206 721.1 384 85.2
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.1e-204 716.8 469 71.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.7e-202 709.5 440 74.1
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 9.4e-201 703.7 444 74.5
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.2e-199 698.0 486 68.5
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 6.5e-194 681.0 482 70.3
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 3.6e-192 675.2 461 73.3
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.7e-182 641.3 365 79.2
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.9e-179 631.3 365 78.4
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.3e-177 625.5 457 68.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.5e-169 600.1 479 63.7
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.6e-153 545.0 407 69.0
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 3.5e-147 525.8 304 79.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 3.1e-143 512.7 281 86.1
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.9e-141 506.1 275 86.2
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.4e-140 503.8 304 77.6
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 6.6e-138 495.0 410 60.2
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 4.3e-137 492.3 436 55.7
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 6.0e-131 471.9 306 73.9
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.3e-125 454.1 308 71.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 3.5e-107 392.9 211 87.2
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.6e-107 392.5 254 74.0
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-100 368.6 228 75.9
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-100 368.6 228 75.9
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 2.0e-97 360.5 416 46.9
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 4.5e-94 349.4 200 85.0
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 5.1e-90 335.9 463 43.8
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.6e-75 287.7 427 41.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 4.4e-73 279.6 151 83.4
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.7e-70 270.4 179 70.4
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.7e-69 267.7 179 69.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 3.2e-68 263.5 171 73.7
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 4.2e-68 263.1 171 73.7
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.7e-48 198.0 110 81.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.7e-48 198.0 110 81.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 6.4e-48 196.1 108 84.3
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.1e-37 159.8 95 84.2
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.5e-36 158.3 97 76.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 2.5e-36 157.5 105 69.5
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 3.4e-33 147.1 81 81.5
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.7e-29 134.8 77 81.8
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 3.0e-29 134.0 91 69.2
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 2.5e-20 104.4 65 70.8
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 2.5e-20 104.4 56 83.9
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 7.3e-20 102.8 135 40.7
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.3e-16 92.0 75 56.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.3e-16 92.0 72 66.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.3e-16 92.0 72 66.7
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.6e-14 83.6 45 77.8
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 6.0e-14 83.2 72 61.1
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.3e-13 81.3 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 6.9e-10 69.7 34 82.4
C03p16540 Brassica napus HOM05D004186 ORTHO05D011383 9.0e-10 69.3 84 42.9
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 9.0e-10 69.3 55 56.4
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 9.0e-10 69.3 55 56.4
BcaC01g06364 Brassica carinata HOM05D004186 ORTHO05D011383 3.4e-09 67.4 81 43.2
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 4.9e-08 63.5 58 51.7
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 6.4e-08 63.2 48 56.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.1e-07 62.4 35 82.9
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 4.2e-07 60.5 55 50.9
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 4.2e-07 60.5 37 78.4
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 9.3e-07 59.3 55 50.9
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 9.3e-07 59.3 55 50.9
BcaC01g06358 Brassica carinata HOM05D004186 ORTHO05D011383 4.6e-06 57.0 58 46.6
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 6.0e-06 56.6 55 49.1
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 6.0e-06 56.6 55 49.1


User provided reference genes

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