Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.4e-75 285.8 192 100.0
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 6.1e-58 228.0 190 64.2
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 8.8e-57 224.2 192 65.6
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 8.8e-57 224.2 194 62.9
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 3.3e-56 222.2 192 65.1
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 3.7e-55 218.8 192 62.5
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 8.2e-55 217.6 192 70.8
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.1e-54 217.2 191 60.7
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.1e-54 217.2 192 63.5
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.4e-54 216.9 190 61.6
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.4e-54 216.9 192 61.5
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.4e-54 216.9 195 73.3
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 2.4e-54 216.1 192 70.8
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 5.3e-54 214.9 190 61.6
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 5.3e-54 214.9 192 60.9
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 2.6e-53 212.6 192 59.4
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.0e-52 210.7 192 64.1
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.3e-52 210.3 192 57.8
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-52 209.1 190 59.5
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 2.9e-52 209.1 190 59.5
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 2.9e-52 209.1 192 77.1
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 5.0e-52 208.4 190 57.9
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 5.0e-52 208.4 190 63.7
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 1.1e-51 207.2 189 59.8
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.4e-51 206.8 190 60.5
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 2.5e-51 206.1 189 59.3
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.5e-51 206.1 192 72.9
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 3.2e-51 205.7 192 58.3
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 9.4e-51 204.1 192 58.3
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.2e-50 203.8 188 59.0
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 3.6e-50 202.2 193 59.6
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 4.7e-50 201.8 192 60.4
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 7.9e-50 201.1 192 72.4
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 2.3e-49 199.5 190 68.9
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 3.9e-49 198.7 190 67.4
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 6.7e-49 198.0 191 64.4
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 4.4e-48 195.3 194 54.6
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.3e-47 193.7 192 57.3
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 2.8e-47 192.6 190 53.2
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.4e-46 190.3 191 57.6
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 1.4e-46 190.3 190 52.6
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 2.4e-46 189.5 190 55.8
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 2.4e-46 189.5 190 55.8
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 9.1e-46 187.6 190 63.7
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 1.2e-45 187.2 194 53.1
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.5e-45 186.8 190 56.8
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.5e-45 186.8 188 57.4
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 4.5e-45 185.3 190 54.2
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 5.9e-45 184.9 197 53.8
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 7.7e-45 184.5 197 60.4
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 7.7e-45 184.5 242 46.7
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.7e-44 183.3 190 53.7
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 2.2e-44 183.0 190 53.2
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 2.2e-44 183.0 190 54.7
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.8e-44 182.2 191 56.0
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 2.5e-43 179.5 180 56.1
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 2.5e-43 179.5 190 53.7
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 3.2e-43 179.1 190 52.6
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 4.2e-43 178.7 194 54.6
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 5.5e-43 178.3 193 60.6
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 5.5e-43 178.3 190 53.2
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 9.4e-43 177.6 193 53.4
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 1.2e-42 177.2 193 53.4
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 2.1e-42 176.4 193 53.4
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 2.1e-42 176.4 192 56.2
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 2.7e-42 176.0 177 64.4
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 4.7e-42 175.3 179 56.4
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.4e-41 173.7 187 52.9
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 1.1e-40 170.6 194 54.6
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 1.1e-40 170.6 190 51.1
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.1e-40 170.6 180 54.4
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.5e-40 170.2 190 53.2
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 2.0e-40 169.9 190 49.5
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 4.4e-40 168.7 190 52.6
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 5.7e-40 168.3 194 50.5
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 7.4e-40 167.9 190 60.5
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 1.3e-39 167.2 190 57.4
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.7e-39 166.8 190 52.6
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 1.7e-39 166.8 196 49.5
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 2.8e-39 166.0 190 67.4
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 2.8e-39 166.0 188 53.2
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 2.8e-39 166.0 190 52.6
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 4.8e-39 165.2 195 49.2
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.4e-38 163.7 193 50.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.4e-38 163.7 190 61.1
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.4e-38 163.7 190 61.1
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 1.4e-38 163.7 190 48.9
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 2.4e-38 162.9 189 49.7
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.1e-38 162.5 191 49.2
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 7.0e-38 161.4 190 48.4
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.6e-37 160.2 188 48.4
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.0e-37 159.8 186 50.0
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 3.5e-37 159.1 190 64.7
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 4.5e-37 158.7 200 54.0
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 7.7e-37 157.9 188 49.5
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 7.7e-37 157.9 188 49.5
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.7e-36 156.8 168 52.4
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 1.7e-36 156.8 191 51.8
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.9e-36 156.0 195 47.7
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.5e-35 153.7 190 47.4
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 1.9e-35 153.3 200 44.0
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 9.4e-35 151.0 218 50.0
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 2.3e-33 146.4 190 47.9
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 4.4e-32 142.1 173 48.0
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 9.7e-32 141.0 168 68.5
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.1e-30 137.5 188 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 3.1e-30 136.0 191 40.3
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 2.7e-29 132.9 193 45.1
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 1.0e-28 131.0 211 41.2
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 5.0e-28 128.6 145 49.0
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.2e-26 124.0 186 38.7
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 2.1e-26 123.2 145 48.3
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 1.4e-25 120.6 191 38.2
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.6e-24 116.3 82 74.4
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 5.7e-24 115.2 82 73.2
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 3.7e-23 112.5 82 72.0
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 3.7e-23 112.5 201 37.8
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 6.3e-23 111.7 74 78.4
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 1.1e-22 110.9 112 58.0
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.1e-22 110.9 143 48.3
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 4.1e-22 109.0 156 56.4
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 4.5e-21 105.5 138 46.4
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 5.9e-21 105.1 148 44.6
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 2.9e-20 102.8 59 88.1
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 5.0e-20 102.1 145 45.5
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.1e-19 100.9 89 57.3
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 3.6e-18 95.9 146 43.2
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.6e-16 89.7 135 43.0
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 5.7e-16 88.6 94 50.0
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-15 87.4 87 57.5
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 6.3e-15 85.1 103 55.3
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 1.4e-14 84.0 111 43.2
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.3e-12 76.6 74 52.7
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 2.9e-12 76.3 45 75.6
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 7.3e-11 71.6 41 80.5
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 2.3e-09 66.6 44 65.9
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 3.1e-09 66.2 51 70.6
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 4.0e-09 65.9 82 42.7
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 5.8e-08 62.0 36 75.0
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 1.7e-07 60.5 43 60.5


User provided reference genes

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