Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 0.0e+00 1098.6 568 100.0
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 7.1e-264 913.7 563 82.4
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 7.1e-264 913.7 569 82.6
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.5e-263 911.4 569 79.8
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.3e-262 909.4 571 79.9
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 1.7e-262 909.1 564 82.1
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 5.1e-262 907.5 569 81.0
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.1e-261 906.4 569 79.4
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 1.1e-261 906.4 570 80.9
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.1e-261 906.4 568 81.2
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.3e-260 902.9 566 81.4
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 1.4e-259 899.4 568 80.3
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.6e-258 895.2 567 79.7
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 4.5e-258 894.4 567 80.8
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 2.2e-257 892.1 573 80.5
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 2.9e-257 891.7 572 80.4
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.8e-257 891.3 573 80.5
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.9e-256 889.0 569 78.0
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 5.4e-256 887.5 569 77.5
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.4e-256 887.5 569 78.2
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.2e-255 886.3 569 79.8
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 2.7e-255 885.2 571 78.5
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.8e-254 882.5 552 81.2
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.8e-254 882.5 558 80.5
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.8e-254 882.5 569 76.8
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.0e-254 881.7 582 78.7
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.5e-253 879.4 569 78.4
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 9.9e-250 866.7 569 77.5
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.4e-248 862.8 565 78.8
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 1.4e-248 862.8 566 78.6
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 6.0e-247 857.4 569 76.6
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.3e-246 856.3 575 76.5
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.8e-246 855.9 549 80.0
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 2.3e-246 855.5 569 76.6
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 4.3e-245 851.3 570 76.1
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 4.3e-245 851.3 628 71.7
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 2.1e-244 849.0 552 79.9
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 4.8e-244 847.8 564 75.9
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 8.2e-244 847.0 569 75.9
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 1.4e-243 846.3 563 76.6
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 4.0e-243 844.7 573 75.0
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 6.9e-243 844.0 566 75.8
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.0e-242 842.4 568 75.7
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.0e-242 842.4 564 75.4
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.0e-241 840.1 570 74.6
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 6.5e-241 837.4 569 76.4
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.4e-240 836.3 553 76.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 5.5e-240 834.3 562 75.4
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.2e-239 833.2 567 75.0
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.2e-239 833.2 561 74.5
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 2.2e-236 822.4 560 75.0
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.2e-236 822.4 565 73.3
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 4.8e-236 821.2 588 71.6
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.1e-235 820.1 571 73.0
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 4.5e-234 814.7 572 73.4
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 3.8e-233 811.6 572 73.8
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.1e-232 810.1 572 73.8
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 2.5e-232 808.9 570 73.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 9.3e-232 807.0 568 73.1
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 2.7e-231 805.4 567 73.4
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 7.9e-231 803.9 572 72.9
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 7.9e-231 803.9 567 73.2
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.3e-230 802.4 567 72.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 2.3e-230 802.4 568 72.9
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 5.1e-230 801.2 572 71.9
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 5.1e-230 801.2 567 72.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 8.8e-230 800.4 552 75.0
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.9e-229 799.3 573 71.7
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 5.7e-229 797.7 609 69.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 5.3e-227 791.2 565 72.0
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 6.9e-227 790.8 564 71.6
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.9e-227 790.8 568 71.8
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 7.7e-226 787.3 587 69.7
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.8e-222 776.2 570 70.4
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.8e-222 776.2 538 74.2
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 3.9e-222 775.0 589 68.9
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.9e-222 775.0 580 72.2
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.4e-219 766.5 570 69.5
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 4.1e-219 765.0 603 68.8
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.2e-218 763.5 563 70.5
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 7.7e-218 760.8 582 69.6
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.5e-216 754.6 587 68.3
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 9.7e-213 743.8 556 69.4
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 9.1e-211 737.3 551 69.7
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 7.2e-208 727.6 568 66.9
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 1.3e-204 716.8 561 65.8
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 8.5e-201 704.1 430 83.7
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.1e-200 703.7 510 71.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.9e-179 633.3 430 74.2
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 2.8e-175 619.4 690 51.6
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 2.3e-174 616.3 568 58.5
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 6.8e-166 588.2 563 54.9
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 7.3e-160 568.2 561 56.3
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 2.6e-149 533.1 569 50.8
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.1e-142 511.1 555 52.3
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 4.5e-125 452.6 324 72.8
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.1e-110 403.3 273 75.1
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.7e-108 397.5 275 74.2
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 8.2e-95 352.1 308 59.1
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 2.4e-94 350.5 222 79.7
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.0e-76 292.0 196 72.4
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 4.7e-58 229.9 296 50.7
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.4e-54 217.6 166 68.7
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.8e-50 204.1 240 42.9
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 6.6e-44 183.0 120 73.3
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 2.1e-42 177.9 147 61.9
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 8.1e-42 176.0 116 77.6
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-41 175.6 120 70.8
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.0e-36 157.5 132 60.6
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 3.9e-36 157.1 115 70.4
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 9.9e-32 142.5 103 72.8
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 9.9e-24 115.9 180 41.7
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-22 112.1 187 40.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.4e-22 110.2 85 67.1
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.0e-20 105.9 131 46.6
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.1e-17 95.9 82 59.8
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.1e-14 85.9 141 42.6
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.9e-14 85.1 97 46.4
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 4.2e-14 84.0 55 81.8
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-10 72.4 208 30.3
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.7e-10 70.9 175 34.9
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 8.2e-10 69.7 97 40.2
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 6.9e-09 66.6 45 68.9
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 2.0e-08 65.1 141 36.9
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 2.6e-08 64.7 37 81.1
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 5.8e-08 63.5 51 66.7
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 3.2e-06 57.8 76 39.5
CSS0030339 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 4.2e-06 57.4 89 42.7


User provided reference genes

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