Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 0.0e+00 1186.4 576 100.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.1e-288 996.1 543 87.1
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 9.3e-288 993.0 551 85.1
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 2.7e-287 991.5 566 84.5
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.6e-287 990.7 574 82.8
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.3e-286 989.2 566 83.9
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.8e-286 988.8 574 82.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 8.7e-286 986.5 564 84.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.7e-286 986.5 577 82.5
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 8.7e-286 986.5 552 85.1
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-285 984.9 564 83.9
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.3e-285 984.6 561 84.0
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 4.3e-285 984.2 569 82.8
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 5.7e-285 983.8 558 84.4
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 9.7e-285 983.0 564 83.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.6e-284 982.2 570 82.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 4.8e-284 980.7 566 83.4
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 6.3e-284 980.3 566 82.3
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 6.3e-284 980.3 552 84.4
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.2e-284 979.9 577 82.1
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-283 979.5 564 83.7
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.8e-283 978.8 560 83.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.4e-283 978.4 543 84.9
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.1e-283 978.0 578 81.8
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.1e-283 978.0 565 82.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 5.3e-283 977.2 545 85.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.2e-282 976.1 544 84.4
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.2e-282 976.1 569 82.4
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.0e-282 975.3 553 83.9
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.6e-282 974.9 569 82.6
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 3.4e-282 974.5 544 84.2
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 5.9e-282 973.8 544 84.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 5.9e-282 973.8 552 83.7
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.0e-281 973.0 573 80.8
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.0e-281 973.0 543 84.7
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.3e-281 972.6 553 83.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.7e-281 972.2 560 83.4
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.2e-281 971.8 551 83.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.2e-281 971.8 552 83.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.8e-281 971.1 543 84.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.0e-281 970.7 573 82.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 8.5e-281 969.9 553 83.2
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 8.5e-281 969.9 553 83.9
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.9e-280 968.8 573 82.2
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.9e-280 968.8 571 81.6
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.2e-280 967.6 573 82.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 7.2e-280 966.8 544 84.7
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 7.2e-280 966.8 543 84.9
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 9.4e-280 966.5 553 83.0
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 9.4e-280 966.5 563 82.8
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.2e-279 966.1 551 83.1
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.6e-279 965.7 553 82.6
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.6e-279 964.1 553 83.4
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 4.6e-279 964.1 553 83.0
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 6.1e-279 963.8 553 82.3
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 6.1e-279 963.8 565 81.6
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 7.9e-279 963.4 579 81.0
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.0e-278 963.0 551 82.9
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.8e-278 962.2 553 82.5
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.8e-278 962.2 553 82.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.9e-278 961.1 565 81.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.1e-277 959.5 566 81.3
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 4.3e-277 957.6 551 82.8
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 4.3e-277 957.6 591 78.8
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.7e-277 957.2 551 82.9
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.3e-276 956.1 553 82.3
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.7e-276 955.7 551 82.4
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.2e-276 955.3 553 82.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 2.8e-276 954.9 572 80.2
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 8.2e-276 953.4 543 83.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.8e-275 952.2 553 81.7
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.0e-274 948.7 550 82.0
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.8e-273 944.5 543 83.1
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.8e-273 944.5 599 76.1
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.8e-273 944.5 573 79.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.1e-272 943.0 561 80.6
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-272 942.6 567 80.8
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.5e-272 941.8 543 82.9
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.6e-269 931.8 543 80.1
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 4.4e-269 931.0 543 82.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.7e-269 929.9 563 79.2
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.8e-267 925.6 550 79.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.4e-267 925.2 573 76.6
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 9.1e-267 923.3 548 79.4
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.5e-266 922.5 543 81.0
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 5.9e-266 920.6 553 78.8
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 7.7e-266 920.2 563 78.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.7e-265 919.1 553 80.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 7.2e-264 913.7 543 79.4
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 7.2e-264 913.7 546 79.3
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.1e-263 912.1 521 84.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.6e-263 911.4 543 80.3
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 5.2e-262 907.5 500 86.6
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.6e-258 895.2 581 75.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.3e-257 892.9 566 78.3
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.6e-255 884.8 545 78.2
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 4.8e-252 874.4 543 75.1
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 9.1e-251 870.2 551 76.0
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-248 862.8 549 77.0
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-247 859.0 540 76.5
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.6e-247 858.2 540 76.3
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.2e-245 853.2 544 74.4
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.5e-245 850.5 497 81.3
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.1e-243 845.1 543 74.2
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 4.5e-242 841.3 543 75.1
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 9.5e-240 833.6 551 73.9
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 9.5e-240 833.6 564 74.1
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.1e-239 832.4 551 75.5
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.3e-232 808.5 549 71.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.7e-228 796.2 449 85.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.2e-228 795.8 503 76.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.3e-224 781.9 567 70.0
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 9.5e-224 780.4 418 87.8
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 6.8e-222 774.2 550 68.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.9e-219 766.1 541 68.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 7.8e-218 760.8 418 87.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.2e-212 742.7 532 67.1
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 3.7e-212 741.9 535 65.0
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-205 720.3 535 65.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.0e-205 719.5 548 64.1
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-200 703.4 540 66.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-200 703.4 540 66.1
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.2e-197 693.7 600 61.7
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.9e-164 582.8 328 85.1
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 9.4e-163 577.8 323 86.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 7.9e-154 548.1 553 55.7
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 4.4e-144 515.8 286 86.0
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 2.2e-140 503.4 546 49.5
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.7e-128 462.2 303 74.3
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.1e-126 456.1 262 79.8
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.7e-119 434.1 355 63.4
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.6e-100 369.0 199 85.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.4e-86 323.9 510 42.0
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 4.6e-69 266.5 188 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.3e-68 265.0 337 45.1
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 7.4e-59 232.6 134 85.1
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 9.6e-59 232.3 139 80.6
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 9.7e-51 205.7 124 79.0
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.1e-49 202.2 132 74.2
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.2e-47 194.5 132 73.5
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.9e-47 194.1 122 76.2
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.9e-47 194.1 122 76.2
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.9e-47 194.1 109 76.1
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.6e-45 187.2 114 72.8
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-44 185.3 115 75.7
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.4e-44 185.3 115 75.7
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-43 179.5 119 72.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.2e-42 177.9 114 74.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.2e-42 177.9 114 74.6
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.7e-39 168.3 95 78.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.3e-34 149.8 76 86.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 2.1e-29 134.8 79 82.3
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-23 115.9 86 66.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.7e-23 115.2 118 47.5
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 3.2e-22 110.9 189 39.2
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 4.7e-21 107.1 62 77.4
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 8.0e-21 106.3 68 73.5
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 8.5e-15 86.3 57 73.7


User provided reference genes

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