Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.6e-191 671.0 328 100.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 9.1e-147 523.9 321 78.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 4.7e-143 511.5 321 76.3
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.8e-142 509.6 326 77.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.2e-140 502.7 349 71.3
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.4e-139 500.0 329 75.1
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.4e-139 500.0 324 76.5
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-139 498.8 324 74.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 7.0e-139 497.7 324 75.6
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.0e-139 497.7 327 75.2
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.0e-139 497.7 327 75.2
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-138 496.9 321 75.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.5e-138 495.4 326 75.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.5e-138 495.4 323 75.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.5e-136 489.2 326 74.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.3e-136 488.8 329 73.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 9.5e-136 487.3 330 72.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.6e-135 486.5 322 74.8
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 4.7e-135 485.0 331 73.4
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 8.0e-135 484.2 324 73.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-134 483.4 326 72.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.8e-134 483.0 326 72.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.3e-134 482.6 322 73.3
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.3e-134 482.6 324 71.9
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 5.2e-134 481.5 324 71.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 6.8e-134 481.1 325 73.5
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 6.8e-134 481.1 325 73.8
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 6.8e-134 481.1 322 74.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.5e-133 479.9 321 73.8
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.6e-133 479.2 322 72.4
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 5.7e-133 478.0 322 72.7
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.2e-132 476.1 325 74.5
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.2e-132 476.1 353 69.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.7e-132 475.3 325 71.7
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.7e-132 475.3 322 71.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 8.3e-132 474.2 324 72.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.1e-131 473.8 327 71.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.1e-131 473.8 321 72.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.1e-131 473.8 321 72.9
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-131 473.8 325 70.8
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.4e-131 473.4 324 72.8
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.2e-131 472.2 325 73.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.6e-130 469.9 337 70.9
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.9e-130 468.0 322 71.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.7e-129 466.5 327 71.6
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.7e-129 466.5 322 70.5
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.1e-128 463.8 324 72.5
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.1e-128 463.8 324 72.5
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.2e-127 460.3 320 70.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.1e-127 459.5 321 72.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.8e-127 459.1 323 71.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 6.2e-127 458.0 323 69.0
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 8.0e-127 457.6 326 69.3
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.0e-126 457.2 324 70.7
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.0e-126 457.2 324 70.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.0e-126 457.2 324 70.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.8e-126 456.4 312 73.1
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.3e-126 456.1 323 69.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.3e-126 456.1 325 70.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 8.9e-126 454.1 316 70.9
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 8.9e-126 454.1 329 69.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.5e-125 453.4 298 75.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.5e-125 453.4 322 68.3
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 4.4e-125 451.8 326 68.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.9e-124 448.4 336 66.4
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 8.3e-124 447.6 326 67.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.4e-123 446.0 325 67.1
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.4e-123 446.0 323 67.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 5.4e-123 444.9 336 65.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.4e-123 444.9 323 67.8
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.4e-123 444.9 320 68.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.2e-122 443.7 317 68.5
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.2e-122 443.7 322 68.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.6e-122 443.4 317 69.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.6e-122 441.8 326 68.4
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.0e-121 439.1 322 69.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.0e-121 438.3 330 68.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-120 436.8 323 68.1
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 7.3e-120 434.5 322 69.3
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 9.5e-120 434.1 329 68.4
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.1e-119 433.0 324 65.7
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 4.7e-119 431.8 316 68.4
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 6.2e-119 431.4 252 81.7
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.8e-118 429.9 324 67.6
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 3.1e-118 429.1 328 67.1
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.0e-117 426.4 328 67.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 4.4e-117 425.2 314 66.6
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 9.8e-117 424.1 316 68.7
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 8.3e-116 421.0 294 70.1
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 7.1e-115 417.9 322 66.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-114 417.2 297 70.4
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.7e-114 416.0 328 65.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 4.6e-114 415.2 316 65.8
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-113 414.1 293 70.6
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 3.0e-113 412.5 292 69.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.5e-112 409.5 312 65.4
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 3.3e-112 409.1 294 70.1
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.1e-111 406.4 326 64.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.8e-111 406.0 322 64.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-110 404.1 292 68.2
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.2e-110 401.7 293 70.0
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 5.8e-109 398.3 327 63.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.2e-107 392.5 328 62.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 5.4e-107 391.7 322 61.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.7e-106 389.4 296 66.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.7e-105 386.7 297 67.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.3e-104 382.1 312 61.9
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.2e-103 378.3 264 70.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.2e-102 375.2 291 66.7
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.6e-101 372.9 314 61.8
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.7e-97 360.1 225 75.6
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.1e-97 358.6 237 73.8
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.8e-94 350.1 270 66.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 9.0e-94 347.8 221 72.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.0e-93 346.7 326 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.1e-91 340.9 295 59.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.6e-90 337.0 324 57.4
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.6e-90 335.5 243 69.5
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.3e-88 329.3 339 51.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.2e-85 320.9 285 58.6
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.4e-85 319.3 263 62.0
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.4e-85 319.3 262 64.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.0e-82 308.5 294 57.5
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 7.9e-82 308.1 235 67.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.5e-75 285.4 231 62.3
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.3e-72 276.2 268 57.1
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 9.6e-72 274.6 197 70.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.3e-71 271.9 166 78.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.4e-70 270.8 283 51.2
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.4e-70 270.0 232 57.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.2e-67 259.6 215 63.3
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.2e-67 259.2 223 61.0
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 7.2e-67 258.5 175 66.9
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.9e-66 255.0 213 61.5
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.9e-66 255.0 213 61.5
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.0e-61 240.4 192 67.2
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.2e-60 236.9 234 55.1
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.0e-60 235.7 223 57.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-58 231.1 196 64.8
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.7e-55 220.7 139 73.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 9.1e-54 214.9 237 47.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.9e-52 209.9 227 52.4
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.5e-51 206.8 241 50.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 5.5e-51 205.7 136 72.8
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.6e-45 186.8 243 43.6
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.2e-43 179.5 113 73.5
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.8e-39 166.8 142 59.9
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.7e-39 166.4 233 39.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.8e-38 164.1 150 50.7
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 3.1e-38 163.3 163 50.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 4.5e-37 159.5 273 41.4
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 8.5e-36 155.2 116 63.8
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.2e-35 153.3 185 50.3
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-33 148.3 121 65.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.8e-33 145.2 155 49.0
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 4.4e-32 142.9 179 46.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 4.4e-32 142.9 179 46.4
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 9.8e-32 141.7 179 46.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.2e-31 140.6 174 52.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-25 121.3 82 68.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 4.0e-25 119.8 324 30.6
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 6.8e-25 119.0 140 48.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.5e-24 117.9 83 68.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.8e-24 115.2 94 59.6
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.4e-22 111.3 72 62.5
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 7.0e-22 109.0 75 64.0
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 7.8e-21 105.5 73 60.3
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.3e-20 104.8 70 58.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.8e-20 103.2 75 57.3
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 4.3e-19 99.8 75 57.3
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 4.3e-19 99.8 75 57.3
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 7.3e-19 99.0 119 42.9
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 3.6e-18 96.7 63 63.5
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 3.0e-17 93.6 85 50.6
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 3.0e-17 93.6 85 50.6
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 2.0e-16 90.9 67 55.2
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 2.0e-16 90.9 67 55.2
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.4e-16 90.1 91 56.0
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.9e-15 87.0 103 51.5
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.7e-15 86.7 80 55.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.9e-15 86.3 68 64.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 2.4e-14 84.0 111 37.8
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.9e-11 74.3 177 37.3
EL10Ac2g03558 Beta vulgaris HOM05D003601 ORTHO05D004896 1.0e-09 68.6 72 50.0
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 6.4e-07 59.3 68 50.0
Sabra12G0049400 Salix brachista HOM05D000650 ORTHO05D000735 7.0e-06 55.8 63 50.8


User provided reference genes

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