Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0259 Cannabis sativa HOM05D002724 ORTHO05D002995 3.2e-87 325.1 169 100.0
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 2.5e-63 245.7 149 87.9
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 3.0e-45 185.7 149 66.4
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 6.8e-45 184.5 145 70.3
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 6.8e-45 184.5 157 63.1
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 6.8e-45 184.5 149 65.1
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 2.6e-44 182.6 156 66.0
MD05G1312500 Malus domestica HOM05D002724 ORTHO05D002995 3.4e-44 182.2 157 62.4
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 7.5e-44 181.0 149 67.1
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 9.8e-44 180.6 149 65.1
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 4.8e-43 178.3 149 67.1
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 8.3e-43 177.6 150 66.7
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 1.1e-42 177.2 149 68.5
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 5.4e-42 174.9 149 63.8
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.2e-41 173.7 149 63.8
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.2e-41 173.7 149 63.8
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.6e-41 173.3 149 65.8
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 2.0e-41 172.9 149 65.8
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 2.0e-41 172.9 157 61.1
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 2.7e-41 172.6 149 63.8
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 3.5e-41 172.2 149 64.4
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 4.5e-41 171.8 141 66.7
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 5.9e-41 171.4 141 65.2
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 5.9e-41 171.4 149 65.8
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 7.7e-41 171.0 149 63.8
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 1.7e-40 169.9 149 63.1
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 2.9e-40 169.1 149 64.4
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 1.1e-39 167.2 131 67.9
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 1.5e-39 166.8 141 63.1
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 3.3e-39 165.6 149 61.7
Nn1g06542 Nelumbo nucifera HOM05D002724 ORTHO05D002995 4.2e-39 165.2 133 68.4
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 5.5e-39 164.9 150 60.7
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 9.5e-39 164.1 150 60.7
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 9.5e-39 164.1 150 60.7
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 1.6e-38 163.3 149 60.4
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.1e-38 162.9 150 60.0
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 2.1e-38 162.9 150 60.7
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 2.8e-38 162.5 150 60.7
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.6e-38 162.2 150 60.0
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.6e-38 162.2 150 60.0
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 4.7e-38 161.8 137 62.8
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 8.0e-38 161.0 149 58.4
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 1.4e-37 160.2 149 57.7
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 3.0e-37 159.1 135 63.7
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 5.2e-37 158.3 143 61.5
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 8.9e-37 157.5 149 58.4
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 8.9e-37 157.5 134 61.9
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 1.5e-36 156.8 149 57.0
CsaV3_UNG045320 Cucumis sativus L. HOM05D002724 ORTHO05D002995 3.4e-36 155.6 141 65.2
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 3.4e-36 155.6 137 63.5
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 4.4e-36 155.2 138 60.9
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 5.7e-36 154.8 149 60.4
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 7.5e-36 154.5 149 57.7
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 9.8e-36 154.1 137 61.3
PGSC0003DMG401029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 2.2e-35 152.9 143 57.3
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 2.8e-35 152.5 136 64.0
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 4.9e-35 151.8 134 61.9
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 4.9e-35 151.8 169 53.3
FvH4_4g01371 Fragaria vesca HOM05D002724 ORTHO05D002995 8.3e-35 151.0 131 63.4
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 1.1e-34 150.6 134 62.7
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 1.8e-34 149.8 167 55.7
AL7G31640 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.4e-34 149.4 149 56.4
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 2.4e-34 149.4 161 55.3
FvH4_4g01320 Fragaria vesca HOM05D002724 ORTHO05D002995 1.2e-33 147.1 140 57.9
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 2.7e-33 146.0 134 60.4
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 3.5e-33 145.6 161 57.1
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 3.5e-33 145.6 161 54.0
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 1.0e-32 144.1 149 57.0
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 1.3e-32 143.7 150 56.7
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 1.7e-32 143.3 204 47.1
AL7G32210 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.9e-32 142.5 134 57.5
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.9e-32 142.1 147 55.1
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 5.0e-32 141.7 149 55.7
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.5e-31 140.2 134 58.2
FAN25G1567 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.5e-31 140.2 157 52.2
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 1.9e-31 139.8 133 56.4
BolC1t02617H Brassica oleracea HOM05D002724 ORTHO05D002995 1.9e-31 139.8 156 51.9
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 3.3e-31 139.0 125 65.6
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 3.3e-31 139.0 125 62.4
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 4.3e-31 138.7 150 55.3
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 5.6e-31 138.3 152 53.9
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 7.3e-31 137.9 150 57.3
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 7.3e-31 137.9 161 50.3
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.5e-31 137.5 127 59.8
Lj1A843G46 Lonicera japonica HOM05D002724 ORTHO05D002995 2.1e-30 136.3 130 60.8
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 3.6e-30 135.6 150 55.3
BraA01t02048Z Brassica rapa HOM05D002724 ORTHO05D002995 3.6e-30 135.6 156 51.9
BcaC09g50311 Brassica carinata HOM05D002724 ORTHO05D002995 6.1e-30 134.8 156 50.6
A01p21430 Brassica napus HOM05D002724 ORTHO05D002995 6.1e-30 134.8 162 50.6
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 1.0e-29 134.0 164 51.8
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 1.0e-29 134.0 149 55.0
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 1.4e-29 133.7 134 57.5
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 1.4e-29 133.7 158 51.3
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.8e-29 133.3 135 55.6
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 5.2e-29 131.7 162 50.0
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 5.2e-29 131.7 155 52.9
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 6.8e-29 131.3 141 56.0
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 6.8e-29 131.3 141 56.0
Oeu019329.2 Olea europaea HOM05D002724 ORTHO05D002995 9.8e-28 127.5 133 57.9
Aqoxy4G00812 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 6.4e-27 124.8 145 46.9
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 8.3e-27 124.4 141 49.6
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 1.9e-26 123.2 146 52.1
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 2.4e-26 122.9 137 53.3
Sp7g19890 Schrenkiella parvula HOM05D002724 ORTHO05D002995 4.1e-26 122.1 135 51.9
C01p26760 Brassica napus HOM05D002724 ORTHO05D002995 7.0e-26 121.3 180 43.9
Zm00001eb185960 Zea mays HOM05D002724 ORTHO05D002995 9.2e-26 120.9 149 46.3
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 1.2e-25 120.6 134 48.5
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 1.6e-25 120.2 141 48.9
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 2.0e-25 119.8 133 51.9
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 2.7e-25 119.4 163 47.9
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 3.9e-24 115.5 150 50.0
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 6.6e-24 114.8 150 48.7
BcaNung00220 Brassica carinata HOM05D002724 ORTHO05D002995 6.6e-24 114.8 117 55.6
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 8.6e-24 114.4 151 45.7
Mapoly0104s0033 Marchantia polymorpha HOM05D002724 ORTHO05D002995 3.3e-23 112.5 143 49.0
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 5.6e-23 111.7 149 49.7
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 9.5e-23 110.9 157 45.9
Hund02192 Selenicereus undatus HOM05D002724 ORTHO05D002995 9.5e-23 110.9 134 44.8
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 1.6e-22 110.2 97 60.8
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 2.8e-22 109.4 81 71.6
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.6e-22 109.0 135 48.9
FAN05G1795 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.7e-22 108.6 123 48.0
FAN05G4176 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.7e-22 108.6 123 48.0
FvH4_6g18030 Fragaria vesca HOM05D002724 ORTHO05D002995 6.2e-22 108.2 123 48.0
FAN23G2429 Fragaria x ananassa HOM05D002724 ORTHO05D002995 8.0e-22 107.8 123 47.2
FAN14G5819 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.4e-21 107.1 123 48.0
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 2.3e-21 106.3 196 38.8
FvH4_1g07580 Fragaria vesca HOM05D002724 ORTHO05D002995 4.0e-21 105.5 123 46.3
FAN19G0887 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.0e-21 105.5 123 46.3
Sopen01g047460 Solanum pennellii HOM05D002724 ORTHO05D002995 6.8e-21 104.8 134 47.0
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.5e-20 103.6 139 41.7
SMO122G0002 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 1.5e-20 103.6 134 45.5
RcHm_v2.0_Chr4g0419821 Rosa chinensis HOM05D002724 ORTHO05D002995 2.0e-20 103.2 109 56.9
FAN26G3213 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.4e-20 102.4 123 45.5
SEGI_13478 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 7.5e-20 101.3 137 46.7
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 7.5e-20 101.3 123 48.0
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 7.5e-20 101.3 138 46.4
Actinidia12809 Actinidia chinensis HOM05D002724 ORTHO05D002995 8.3e-19 97.8 121 52.9
RcHm_v2.0_Chr5g0005941 Rosa chinensis HOM05D002724 ORTHO05D002995 8.3e-19 97.8 76 64.5
FAN28G0882 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-18 97.4 104 49.0
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 1.4e-18 97.1 116 50.0
Pp3c2_19730 Physcomitrium patens HOM05D002724 ORTHO05D002995 1.9e-18 96.7 123 43.9
SEGI_12329 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 2.4e-18 96.3 177 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1625 Anthoceros agrestis HOM05D002724 ORTHO05D002995 3.2e-18 95.9 142 41.5
BcaC09g51501 Brassica carinata HOM05D002724 ORTHO05D002995 3.2e-18 95.9 72 65.3
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 4.1e-18 95.5 90 52.2
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 1.6e-17 93.6 127 40.9
FAN26G2256 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.6e-17 93.6 123 43.9
Mapoly0104s0034 Marchantia polymorpha HOM05D002724 ORTHO05D002995 2.7e-17 92.8 142 44.4
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 2.7e-17 92.8 125 49.6
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 3.5e-17 92.4 140 43.6
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 3.5e-17 92.4 93 52.7
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 3.5e-17 92.4 135 45.9
RcHm_v2.0_Chr3g0472291 Rosa chinensis HOM05D002724 ORTHO05D002995 4.6e-17 92.0 142 44.4
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 6.0e-17 91.7 134 42.5
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.7e-16 90.1 114 43.0
SMO118G0057 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 5.1e-16 88.6 142 40.1
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 1.5e-15 87.0 178 38.2
Sp1g30090 Schrenkiella parvula HOM05D002724 ORTHO05D002995 4.3e-15 85.5 81 54.3
SGA_v2.0_scaffold46G17492 Striga asiatica HOM05D002724 ORTHO05D002995 1.2e-14 84.0 133 39.8
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 4.7e-14 82.0 149 40.9
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 1.1e-13 80.9 143 35.7
Migut.H01935 Erythranthe guttata HOM05D002724 ORTHO05D002995 2.3e-13 79.7 146 38.4
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 5.2e-13 78.6 71 64.8
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 8.9e-13 77.8 144 39.6
FAN02G2915 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.3e-11 73.9 77 51.9
SMO351G0294 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 4.9e-11 72.0 82 48.8
PRCOL_00004338 Prasinoderma coloniale HOM05D002724 ORTHO05D002995 1.4e-10 70.5 137 37.2
CAN.G199.6 Capsicum annuum HOM05D002724 ORTHO05D002995 1.9e-10 70.1 61 59.0
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 1.9e-10 70.1 63 63.5
Eucgr.E03103 Eucalyptus grandis HOM05D002724 ORTHO05D002995 3.2e-10 69.3 58 62.1
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 5.4e-10 68.6 52 63.5
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 7.1e-10 68.2 77 46.8
Sabra04G0027100 Salix brachista HOM05D002724 ORTHO05D002995 9.2e-10 67.8 60 60.0
FAN09G0464 Fragaria x ananassa HOM05D001859 ORTHO05D001836 3.9e-08 62.4 56 60.7
FAN13G2558 Fragaria x ananassa HOM05D002724 ORTHO05D002995 8.6e-08 61.2 49 65.3
Hund22909 Selenicereus undatus HOM05D002724 ORTHO05D002995 1.1e-07 60.8 108 37.0
QL05p060525 Quercus lobata HOM05D002724 ORTHO05D002995 4.3e-07 58.9 47 66.0
MCO11G655 Micromonas commoda HOM05D002724 ORTHO05D002995 5.6e-07 58.5 103 36.9
arahy.Tifrunner.gnm1.ann1.6JI55L Arachis hypogaea HOM05D009422 ORTHO05D086738 2.8e-06 56.2 51 58.8


User provided reference genes

Program Settings