Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 3651.3 1885 100.0
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2969.1 1886 80.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2962.9 1890 79.8
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2956.8 1886 79.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2945.2 1886 79.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2925.6 1889 79.1
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2919.4 1888 78.4
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2915.2 1887 78.6
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2901.3 1887 78.0
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2898.6 1887 77.7
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2874.7 1887 77.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2860.5 1919 76.9
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2844.7 1885 75.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2839.7 1887 76.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2839.3 1886 76.1
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2815.4 1888 75.5
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2803.5 1893 75.8
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2794.6 1905 75.5
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2794.2 1904 75.2
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2787.7 1886 75.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2787.3 1887 75.0
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2775.0 1913 73.8
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2772.3 1889 74.5
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2750.3 1889 73.6
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2744.5 1897 73.9
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2735.3 1887 73.8
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2734.5 1893 73.8
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2730.3 1889 73.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2726.4 2018 70.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2718.3 1889 73.1
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2718.3 1893 73.0
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2714.5 1895 74.7
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2711.0 1947 71.4
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2708.7 1893 72.6
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2700.6 1711 80.1
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2691.4 1886 71.7
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2675.6 1889 72.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2671.7 1887 71.3
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2662.1 1888 71.4
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2660.9 1888 71.8
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2653.2 1888 71.3
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2642.1 1882 70.7
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2626.7 1891 70.3
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2594.3 1887 70.4
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2590.8 1885 69.3
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2570.8 1887 69.9
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2568.9 1890 69.0
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2565.0 1902 69.3
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2556.9 1888 69.0
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2553.1 1958 67.6
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2549.6 1886 69.4
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2549.2 1891 68.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2538.8 1635 77.7
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2537.7 1894 69.0
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2535.0 1884 68.2
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2531.9 1889 69.1
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2526.9 1884 68.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2525.7 1883 68.3
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2523.4 1882 68.2
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2518.0 1951 66.5
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2517.7 1884 68.1
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2512.6 2318 59.4
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2508.0 1905 68.1
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2507.6 2020 64.6
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2460.3 1891 67.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2443.3 1884 66.3
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2441.4 1886 66.6
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2439.1 1922 66.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2427.1 1888 66.5
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2423.3 1886 66.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2418.7 1887 66.2
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2418.7 1891 66.5
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2415.6 1589 77.5
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2410.9 1925 65.8
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2385.5 1889 65.9
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2378.6 1889 64.3
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2306.6 1505 78.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2264.6 1476 78.0
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1981.5 1447 70.7
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1929.5 1585 63.2
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1903.3 1426 68.7
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1861.7 1188 79.5
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1804.6 1918 50.2
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1753.0 1429 64.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1735.7 1903 48.7
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1677.9 1907 47.8
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1652.5 1456 58.3
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1604.3 1926 46.2
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1580.8 1884 50.1
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1503.8 1213 64.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1411.0 1244 58.5
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1319.3 959 70.4
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1310.0 840 77.7
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1295.4 1951 39.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1262.3 1122 60.9
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1132.9 1640 44.4
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1106.7 1244 49.6
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.1e-308 1062.8 780 68.3
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-299 1033.5 1640 41.6
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.0e-271 939.5 783 60.4
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 6.4e-269 932.2 699 70.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.5e-265 920.2 770 60.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 4.5e-246 856.3 692 64.2
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 8.7e-234 815.5 1055 48.0
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 4.2e-220 770.0 607 65.4
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 5.3e-215 753.1 519 73.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.9e-204 718.0 1032 39.9
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.2e-204 717.2 706 53.1
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 8.8e-202 709.1 1044 40.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.7e-192 678.3 794 49.9
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.5e-169 599.7 495 64.0
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.2e-134 486.1 399 61.7
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-134 485.7 411 65.5
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 9.0e-130 469.9 422 60.4
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-118 433.0 299 76.3
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.4e-101 376.3 349 60.2
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 6.7e-101 374.0 328 61.6
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.3e-100 371.7 229 81.7
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.5e-97 362.8 210 85.2
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-96 358.6 277 66.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.7e-94 352.1 329 60.5
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 6.1e-94 350.9 343 55.4
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 3.8e-88 331.6 265 65.7
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 6.1e-86 324.3 307 58.0
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 8.0e-86 323.9 329 57.4
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.0e-84 319.3 366 48.6
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 5.9e-73 281.2 176 80.1
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.8e-62 245.7 180 68.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-58 233.8 227 56.4
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-58 233.8 227 56.4
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 5.4e-58 231.5 211 61.6
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-56 226.1 333 46.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.1e-55 223.8 299 47.2
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.2e-54 220.3 1741 22.1
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.8e-53 216.5 394 38.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.7e-51 209.9 179 60.9
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.9e-50 206.5 216 53.7
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.7e-48 199.9 168 62.5
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-47 195.3 399 37.6
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 6.2e-38 164.9 149 61.7
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 4.0e-37 162.2 302 34.8
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 4.0e-37 162.2 121 69.4
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 7.6e-36 157.9 173 54.3
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.2e-35 156.4 126 66.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.1e-33 149.8 82 82.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-32 147.1 122 54.9
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.1e-31 144.1 770 21.9
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-31 144.1 97 73.2
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 3.6e-30 139.0 116 60.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-28 134.0 75 89.3
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.4e-28 132.1 96 69.8
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 2.9e-27 129.4 81 77.8
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 5.4e-26 125.2 147 49.7
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.3e-23 115.9 265 33.6
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.6e-22 113.6 77 70.1
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.8e-22 112.8 107 56.1
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.8e-22 112.1 123 43.1
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 9.0e-21 107.8 983 22.8
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 7.1e-18 98.2 101 54.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 2.1e-17 96.7 101 53.5
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-17 96.7 57 80.7
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 5.6e-15 88.6 72 58.3
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 9.6e-15 87.8 80 53.8
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 6.2e-14 85.1 60 76.7
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 3.8e-11 75.9 55 67.3
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 3.2e-10 72.8 89 50.6
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 4.2e-10 72.4 64 48.4
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.5e-10 72.0 66 57.6
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 7.1e-10 71.6 37 83.8
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 2.7e-09 69.7 74 56.8
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 1.8e-08 67.0 127 34.6
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-08 65.9 43 67.4
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 2.5e-07 63.2 40 72.5
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 3.3e-07 62.8 34 79.4
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-07 62.4 41 73.2
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 1.3e-06 60.8 49 63.3
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 4.8e-06 58.9 52 63.5
SHI03381 Sapria himalayana HOM05D007985 ORTHO05D012379 4.8e-06 58.9 47 63.8


User provided reference genes

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