Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 9.4e-273 943.0 491 100.0
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 8.7e-226 786.9 494 84.6
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 5.0e-189 664.8 495 70.3
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.4e-186 656.8 498 69.1
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 5.1e-186 654.8 497 69.2
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.7e-184 648.7 495 69.3
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.4e-182 642.1 478 70.5
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 3.8e-181 638.6 480 69.4
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 5.0e-181 638.3 496 68.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 7.2e-180 634.4 496 67.5
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.1e-179 632.9 484 68.2
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.1e-179 632.9 495 67.9
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 7.9e-179 630.9 478 68.8
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 7.9e-179 630.9 480 69.4
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.4e-178 630.2 465 69.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 6.7e-178 627.9 478 68.8
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 7.4e-177 624.4 457 70.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 9.7e-177 624.0 501 66.3
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.7e-177 624.0 495 67.9
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.3e-176 623.6 500 65.8
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.8e-176 622.5 495 67.5
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.8e-176 621.7 480 69.2
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 1.4e-175 620.2 475 67.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.4e-175 620.2 497 67.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.3e-175 618.2 495 67.5
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 5.3e-175 618.2 480 67.5
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.0e-175 617.8 495 67.3
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.0e-173 614.0 459 68.8
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.2e-173 612.8 477 68.6
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.8e-173 612.1 482 67.2
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.1e-172 610.5 495 65.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.9e-172 609.8 459 69.1
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.2e-172 609.0 495 65.3
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 4.2e-172 608.6 486 66.7
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 5.5e-172 608.2 479 67.6
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.6e-171 605.5 482 66.2
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.7e-171 605.1 467 67.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 6.1e-171 604.7 489 65.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-170 603.6 544 61.8
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.3e-170 602.8 480 66.2
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 3.0e-170 602.4 484 66.5
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.0e-170 602.4 491 65.0
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 5.2e-170 601.7 484 66.3
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 8.8e-170 600.9 465 68.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.6e-169 599.4 485 65.4
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.3e-169 599.0 478 65.9
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 7.4e-169 597.8 486 66.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 9.7e-169 597.4 477 64.4
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.3e-168 597.0 480 65.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.2e-168 596.3 479 65.6
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.8e-168 595.9 486 66.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 3.7e-168 595.5 485 64.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 8.2e-168 594.3 476 65.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 5.3e-167 591.7 453 69.1
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.2e-166 590.5 476 66.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.2e-166 590.5 480 66.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.6e-166 590.1 455 67.9
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.0e-166 589.7 480 65.6
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 3.5e-166 589.0 487 64.7
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 4.5e-166 588.6 488 65.0
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 5.9e-166 588.2 489 63.8
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.0e-165 587.4 459 68.8
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.7e-165 586.6 459 68.4
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 3.8e-165 585.5 469 64.4
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 8.5e-165 584.3 480 65.6
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.5e-164 583.6 459 67.8
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 4.2e-164 582.0 459 67.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.1e-163 579.7 476 66.0
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 4.7e-163 578.6 480 64.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 8.8e-162 574.3 461 65.7
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.8e-160 569.3 480 63.8
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.2e-158 563.9 480 63.1
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 7.7e-158 561.2 463 64.8
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 5.0e-157 558.5 461 63.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.6e-155 553.5 487 62.2
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.8e-154 550.1 461 62.5
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 3.0e-154 549.3 484 61.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.5e-153 547.0 482 60.6
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.6e-153 546.2 455 63.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.7e-152 542.3 469 61.0
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 8.3e-152 541.2 460 63.5
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.1e-151 540.8 486 59.1
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.1e-151 540.8 489 60.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-151 540.8 489 60.7
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.1e-151 540.8 489 60.7
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.4e-151 538.5 487 59.3
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.2e-150 537.3 488 59.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.0e-150 536.6 486 59.5
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.0e-150 536.6 486 59.3
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.5e-150 535.8 461 61.6
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.3e-149 533.9 459 61.2
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.3e-149 533.1 487 58.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 3.8e-149 532.3 456 61.4
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 8.6e-149 531.2 486 58.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.5e-148 528.5 454 61.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.2e-147 527.3 461 60.1
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.8e-147 526.2 482 60.4
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.1e-147 525.0 468 60.7
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 4.0e-146 522.3 468 60.7
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.0e-146 522.3 451 61.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.2e-146 521.9 482 60.0
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 4.4e-145 518.8 485 58.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 4.4e-145 518.8 485 58.6
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 5.7e-145 518.5 519 57.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.7e-145 518.5 485 58.1
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 7.5e-145 518.1 467 59.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.0e-142 510.0 502 57.2
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.5e-137 493.8 453 59.2
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.9e-136 488.8 466 57.9
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.4e-135 486.5 463 57.5
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.9e-133 479.2 452 57.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.5e-132 477.2 453 57.2
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.3e-132 475.7 454 57.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.1e-131 473.4 412 60.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.8e-130 470.3 461 56.4
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.4e-129 466.1 468 56.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.7e-128 463.8 471 55.0
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 9.2e-127 458.0 407 59.7
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-126 457.6 454 56.6
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 4.6e-126 455.7 455 55.6
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.8e-122 443.7 454 53.5
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.1e-122 443.0 456 53.7
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.5e-116 424.1 453 52.5
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.9e-116 423.7 454 53.1
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 3.3e-116 422.9 454 53.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.6e-109 398.7 451 49.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.1e-107 393.7 459 47.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.4e-103 380.2 455 49.5
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.7e-101 374.0 298 66.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.3e-99 367.9 455 45.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.2e-99 365.5 322 61.5
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.2e-99 365.5 322 61.5
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.4e-98 364.4 412 47.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.6e-94 350.9 372 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.1e-91 340.5 419 47.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.9e-85 319.7 309 56.0
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.7e-85 318.5 263 65.4
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.2e-79 298.9 240 67.1
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.4e-74 284.6 197 74.6
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.2e-73 281.6 369 45.0
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.7e-69 265.8 322 51.2
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 5.7e-60 236.1 245 54.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.2e-55 220.3 359 39.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.5e-52 209.1 144 70.1
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.5e-52 209.1 144 70.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.4e-50 204.9 175 60.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 5.0e-48 196.4 158 65.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 6.5e-48 196.1 451 33.5
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 6.8e-45 186.0 441 31.7
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.4e-28 130.2 93 63.4
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.5e-15 88.6 87 60.9
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.1e-09 68.2 58 63.8
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.5e-07 62.0 52 61.5
SEGI_14927 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 4.7e-06 57.0 47 57.4


User provided reference genes

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