Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.2e-80 303.1 157 100.0
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.0e-68 261.5 158 85.4
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.5e-67 259.6 158 84.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.5e-67 258.1 158 84.2
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 5.8e-67 257.7 158 84.8
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.3e-66 256.5 158 83.5
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.3e-66 256.5 158 84.2
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.5e-66 254.2 156 80.8
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 8.4e-66 253.8 156 84.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.1e-65 253.4 157 82.8
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.1e-65 253.4 156 84.0
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.4e-65 253.1 158 82.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.5e-65 252.3 158 82.3
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 4.2e-65 251.5 158 81.0
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.5e-65 251.1 156 80.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.5e-65 251.1 158 82.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 9.3e-65 250.4 158 81.0
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.6e-64 249.6 158 81.0
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.6e-64 249.6 156 82.7
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.6e-64 249.6 158 80.4
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.1e-64 249.2 155 84.5
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.1e-64 249.2 154 80.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 4.6e-64 248.1 156 82.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 7.9e-64 247.3 155 80.6
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.9e-64 247.3 158 80.4
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.3e-63 245.7 157 80.3
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.5e-62 243.0 155 80.6
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.9e-62 242.7 155 81.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 5.7e-62 241.1 157 78.3
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 9.7e-62 240.4 152 81.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.8e-61 238.8 152 80.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 6.3e-61 237.7 144 86.1
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.1e-60 236.9 163 79.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.8e-60 236.1 158 78.5
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.9e-60 234.2 158 77.2
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.2e-59 233.4 142 84.5
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 3.4e-59 231.9 158 76.6
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.3e-58 229.9 200 62.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.3e-58 229.9 159 77.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.0e-58 228.0 172 71.5
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.1e-57 226.9 155 74.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.2e-57 225.3 159 76.7
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.7e-56 222.2 157 73.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-55 220.3 159 74.2
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.3e-55 219.9 159 74.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.3e-55 219.9 159 74.2
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 5.1e-55 218.0 142 78.9
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 8.7e-55 217.2 157 71.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.8e-52 209.5 152 73.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 3.1e-52 208.8 157 69.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 5.3e-52 208.0 153 71.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.3e-52 208.0 152 72.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.5e-51 204.9 159 67.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 5.9e-51 204.5 154 70.8
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.0e-50 203.8 154 66.2
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.0e-50 203.8 129 82.2
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.3e-50 203.4 153 70.6
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.3e-50 203.4 153 70.6
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 71.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 2.9e-50 202.2 223 53.8
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 6.5e-50 201.1 159 71.1
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 8.5e-50 200.7 155 71.6
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-49 200.3 153 69.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.4e-49 199.9 154 64.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.9e-49 199.5 157 72.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.5e-49 199.1 159 70.4
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.2e-49 198.7 155 70.3
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 3.2e-49 198.7 155 70.3
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.2e-49 198.7 155 70.3
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.2e-49 198.4 159 69.8
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 5.5e-49 198.0 155 67.7
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 5.5e-49 198.0 156 67.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.2e-49 197.6 155 69.7
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 7.2e-49 197.6 154 69.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 9.4e-49 197.2 185 62.2
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.4e-49 197.2 155 69.7
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.6e-48 196.4 154 69.5
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.1e-48 196.1 154 69.5
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.7e-48 195.7 157 67.5
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.6e-48 194.9 153 68.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 7.9e-48 194.1 154 68.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 152 67.8
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.8e-47 193.0 155 65.8
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.0e-47 192.2 154 67.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.0e-47 192.2 159 63.5
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.0e-46 189.5 158 67.1
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 4.4e-46 188.3 152 67.8
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 5.7e-46 188.0 156 62.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.7e-45 186.4 152 69.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 2.8e-45 185.7 155 66.5
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.8e-45 185.7 157 62.4
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 4.8e-45 184.9 154 66.2
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 8.2e-45 184.1 154 66.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.4e-44 183.3 270 45.2
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.4e-44 183.3 153 66.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.8e-44 183.0 155 63.9
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.4e-44 182.6 157 62.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 4.1e-44 181.8 181 58.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.2e-43 180.3 155 66.5
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.5e-43 179.9 155 65.2
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-43 179.5 159 66.7
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.9e-43 177.9 159 63.5
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.7e-43 177.6 154 63.0
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.7e-42 176.4 154 63.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.8e-42 175.3 157 59.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-41 173.7 147 66.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-41 173.7 147 66.0
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.5e-41 172.6 167 62.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 4.2e-41 171.8 123 73.2
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.2e-41 171.8 154 61.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.1e-40 169.5 155 59.4
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.1e-40 169.5 144 63.9
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.6e-40 168.7 154 61.0
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.1e-40 167.9 155 60.6
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 7.9e-40 167.5 156 61.5
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.0e-39 167.2 144 63.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.0e-39 165.6 160 58.8
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.5e-38 163.3 151 59.6
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.5e-38 163.3 151 59.6
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.5e-38 163.3 151 59.6
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.4e-38 161.8 139 65.5
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.4e-38 161.8 125 68.0
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 7.4e-38 161.0 152 58.6
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.7e-37 159.8 124 69.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.2e-37 159.5 133 66.2
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.2e-37 159.5 166 59.0
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 4.8e-37 158.3 141 62.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.2e-37 157.5 152 57.2
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.1e-36 157.1 148 56.1
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.4e-36 156.0 115 66.1
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.1e-36 155.6 111 71.2
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.1e-36 155.6 152 56.6
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.1e-36 155.2 93 82.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 5.3e-36 154.8 93 84.9
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 7.0e-36 154.5 147 59.2
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.2e-35 153.7 157 58.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.5e-35 152.1 152 56.6
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 4.5e-35 151.8 148 59.5
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.3e-34 150.2 152 56.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.9e-34 149.1 151 56.3
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.9e-34 149.1 122 66.4
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.0e-34 148.3 165 55.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 8.5e-34 147.5 156 53.8
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-33 146.7 94 80.9
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 4.2e-33 145.2 93 76.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.6e-32 142.1 97 74.2
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-31 139.4 118 65.3
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.5e-30 136.7 176 48.3
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.0e-30 136.3 152 53.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.7e-29 133.3 96 69.8
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-29 133.3 157 53.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.7e-29 133.3 102 66.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.8e-29 132.5 125 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.7e-29 132.1 143 54.5
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 6.3e-29 131.3 161 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.1e-28 130.6 143 55.2
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.2e-26 122.9 155 48.4
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.9e-25 119.8 93 66.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-24 117.1 144 52.1
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-24 116.3 94 63.8
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.6e-24 115.5 92 65.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.8e-22 107.5 157 43.9
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.0e-19 99.8 86 66.3
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 7.7e-19 97.8 84 69.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 3.8e-18 95.5 77 59.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.5e-17 90.9 83 50.6
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.6e-16 90.1 88 60.2
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.0e-16 87.8 88 58.0
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.3e-15 86.3 67 65.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.4e-14 82.0 103 47.6
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.1e-12 75.5 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.0e-12 74.7 62 61.3
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.7e-11 72.8 83 50.6
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-09 66.6 66 50.0
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.3e-09 65.9 76 47.4
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 9.5e-09 64.3 41 75.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.2e-07 58.5 95 43.2
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 1.5e-06 57.0 62 58.1
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.4e-06 55.8 79 40.5


User provided reference genes

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