Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.1e-236 822.0 423 100.0
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 2.1e-220 768.8 452 90.3
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 4.2e-152 542.0 454 64.3
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 1.1e-149 533.9 452 63.5
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.0e-147 524.2 453 63.1
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 7.1e-144 514.6 453 62.0
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-143 513.5 453 62.0
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.7e-140 502.3 454 61.5
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 4.8e-140 501.9 451 61.4
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 4.1e-139 498.8 454 61.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 1.2e-138 497.3 455 60.2
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 6.5e-137 491.5 458 59.4
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 2.7e-135 486.1 458 59.4
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 5.1e-134 481.9 436 61.5
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 1.5e-133 480.3 462 59.1
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 4.3e-133 478.8 460 56.7
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 5.7e-133 478.4 457 59.1
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 2.2e-132 476.5 457 58.9
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.1e-131 474.2 453 58.5
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.1e-131 474.2 453 58.5
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 1.1e-131 474.2 458 56.8
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-131 473.0 452 57.3
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.1e-131 472.2 458 56.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 4.1e-131 472.2 455 58.0
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 1.5e-130 470.3 458 56.8
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 4.5e-130 468.8 458 57.9
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 1.7e-129 466.8 451 58.5
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.7e-129 466.8 453 55.6
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 1.7e-129 466.8 464 55.6
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 3.8e-129 465.7 453 57.6
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 5.0e-129 465.3 454 55.1
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 6.5e-129 464.9 452 56.4
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 1.1e-128 464.2 454 58.4
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 7.2e-128 461.5 453 57.6
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 4.7e-127 458.8 453 58.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 8.8e-126 454.5 457 54.0
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 1.1e-125 454.1 454 55.3
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.5e-125 453.8 458 57.0
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 3.3e-125 452.6 459 58.8
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 7.4e-125 451.4 462 55.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 7.4e-125 451.4 461 53.4
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.3e-124 450.7 456 53.9
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.3e-124 450.7 477 55.3
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 1.3e-124 450.7 453 55.4
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.7e-124 450.3 426 58.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 2.8e-124 449.5 458 54.1
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 3.7e-124 449.1 453 54.1
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 3.7e-124 449.1 453 54.1
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 6.3e-124 448.4 458 53.9
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 8.2e-124 448.0 458 54.1
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 8.2e-124 448.0 458 53.1
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.4e-123 447.2 453 53.0
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 1.8e-123 446.8 461 52.7
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 4.1e-123 445.7 453 53.6
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 1.2e-122 444.1 458 56.6
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 2.6e-122 443.0 453 53.2
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 4.5e-122 442.2 426 56.8
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.0e-121 441.0 447 56.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 5.0e-121 438.7 437 54.5
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 1.6e-119 433.7 459 54.5
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 3.6e-119 432.6 422 56.9
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 8.0e-119 431.4 452 52.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.4e-118 430.6 465 54.6
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 1.8e-118 430.3 454 52.0
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.8e-118 430.3 454 52.4
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 3.0e-118 429.5 458 54.1
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 3.0e-118 429.5 454 52.6
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.0e-117 426.8 460 52.2
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 3.3e-117 426.0 451 53.2
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 9.7e-117 424.5 452 55.5
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 8.2e-116 421.4 439 52.4
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 1.2e-114 417.5 452 52.0
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 2.0e-114 416.8 454 53.7
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.0e-113 414.5 454 51.5
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 6.5e-113 411.8 452 52.4
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.6e-111 407.1 458 52.8
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-110 404.4 430 53.0
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 1.4e-110 404.1 453 51.0
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 3.0e-110 402.9 457 50.8
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 1.2e-109 401.0 462 49.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 4.1e-107 392.5 416 52.9
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 2.0e-106 390.2 457 49.0
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.8e-105 386.0 423 51.5
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 5.7e-101 372.1 461 48.2
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 9.8e-101 371.3 440 49.3
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 2.8e-100 369.8 428 49.5
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 4.8e-100 369.0 452 46.9
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 1.8e-99 367.1 457 49.5
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 3.5e-98 362.8 454 44.5
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.5e-96 357.5 331 58.6
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.5e-88 330.9 445 45.2
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.4e-78 297.7 269 63.2
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.0e-77 293.9 454 41.2
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 2.9e-76 290.0 457 40.3
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-71 274.2 422 41.9
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 5.1e-65 252.7 358 41.9
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.5e-64 251.1 468 36.8
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-56 224.2 304 47.4
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 5.6e-56 222.6 298 47.7
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 6.9e-54 215.7 462 30.1
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 8.7e-49 198.7 196 60.2
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 4.3e-48 196.4 459 34.2
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 9.0e-46 188.7 380 36.3
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 2.2e-36 157.5 389 29.0
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 1.8e-33 147.9 123 62.6
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.1e-32 145.2 397 29.2
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-31 141.4 275 36.4
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.9e-27 127.9 227 32.6
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-23 115.2 99 57.6
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 3.7e-23 113.6 146 45.2
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-22 110.9 73 68.5
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 9.0e-22 109.0 73 67.1
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-21 107.1 73 65.8
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 4.5e-21 106.7 73 64.4
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 5.9e-21 106.3 73 65.8
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 3.8e-20 103.6 80 75.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.5e-20 102.8 102 56.9
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 6.9e-14 82.8 64 54.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.5e-13 80.1 64 54.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 5.9e-13 79.7 55 61.8
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.0e-12 76.6 55 60.0
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-11 75.5 55 60.0
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.6e-10 70.5 61 70.5
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 8.2e-07 59.3 36 75.0
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 1.8e-06 58.2 36 75.0
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.4e-06 57.8 67 43.3


User provided reference genes

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