Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 0.0e+00 1542.7 1045 100.0
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 1.0e-308 1063.5 1046 78.2
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 3.8e-303 1045.0 1060 76.2
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-301 1040.0 1047 76.4
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.6e-301 1039.6 1083 74.7
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.6e-290 1001.9 1048 74.0
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.6e-290 1001.9 1048 74.0
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.1e-289 1000.3 1046 75.0
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 4.0e-289 998.4 1052 73.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 6.9e-289 997.7 1108 72.0
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 2.6e-288 995.7 1103 72.2
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 5.4e-286 988.0 1104 72.6
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 2.7e-285 985.7 1049 73.6
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 4.6e-285 984.9 1062 73.5
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.3e-284 983.4 1108 71.9
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 8.7e-284 980.7 1081 72.9
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.1e-283 980.3 1081 72.9
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.3e-283 978.8 1077 72.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 4.3e-283 978.4 1046 73.7
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 5.6e-283 978.0 1109 71.4
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 7.4e-283 977.6 1048 73.0
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 7.4e-283 977.6 1110 71.3
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 7.4e-283 977.6 1047 73.9
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 1.6e-282 976.5 1110 70.9
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.4e-281 973.4 1110 71.2
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 3.1e-281 972.2 1108 72.1
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 3.1e-281 972.2 1048 73.3
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 5.3e-281 971.5 1088 72.0
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 6.9e-281 971.1 1110 71.4
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.0e-281 970.7 1069 73.7
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 7.6e-280 967.6 1049 73.9
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.7e-279 966.5 1041 72.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.7e-279 966.5 1074 71.4
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 2.2e-279 966.1 1063 72.3
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 3.2e-278 962.2 1044 72.5
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 9.3e-278 960.7 1048 71.9
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.2e-277 960.3 1041 72.8
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 3.0e-276 955.7 1045 72.6
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 1.9e-275 953.0 1048 62.1
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 9.6e-275 950.7 1046 73.4
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.7e-274 948.7 1070 72.1
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 8.2e-274 947.6 1043 72.3
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.1e-273 947.2 1045 72.3
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 2.4e-273 946.0 1060 71.7
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 3.1e-273 945.7 1044 72.2
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.0e-273 945.3 1070 72.2
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.3e-273 944.9 1108 69.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.5e-272 943.3 1045 73.1
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.7e-271 939.9 1130 69.6
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.2e-271 939.5 1106 69.3
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 3.8e-271 938.7 1047 71.6
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.9e-270 936.4 1037 73.3
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 2.1e-269 932.9 1047 71.3
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.9e-268 928.7 1040 72.9
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 9.7e-267 924.1 1081 67.1
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 2.2e-266 922.9 1049 68.4
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 5.3e-265 918.3 1041 72.3
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.0e-263 914.1 1091 67.7
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 5.5e-262 908.3 1053 69.9
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 9.4e-262 907.5 1059 70.3
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.2e-261 907.1 1043 72.1
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.4e-260 903.7 1042 71.3
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 2.5e-259 899.4 1046 70.2
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-259 898.7 1049 66.9
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 4.8e-258 895.2 1039 70.7
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 8.2e-258 894.4 1108 68.8
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 9.1e-257 891.0 1058 66.8
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-255 886.7 1069 66.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 6.5e-255 884.8 1069 66.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.6e-253 880.2 1042 67.8
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.7e-253 879.4 1086 67.1
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 2.7e-253 879.4 1047 69.3
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 4.7e-253 878.6 1211 49.3
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.0e-252 877.5 1062 63.1
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 1.4e-252 877.1 1075 63.2
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.8e-252 876.7 1050 69.9
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 2.3e-252 876.3 1076 65.9
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 3.9e-252 875.5 1046 68.7
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 9.7e-251 870.9 1050 68.8
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.4e-249 867.1 1039 69.8
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.1e-246 857.4 1064 65.6
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 6.1e-245 851.7 1042 70.3
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 6.3e-242 841.6 1044 68.4
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 8.2e-242 841.3 1071 68.4
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.4e-241 840.5 1133 46.5
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 7.0e-241 838.2 1044 68.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 2.5e-238 829.7 1026 66.5
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 6.7e-236 821.6 1065 67.8
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 2.2e-231 806.6 900 74.4
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.7e-229 799.7 484 81.2
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.3e-220 770.0 486 76.5
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 1.7e-218 763.8 484 76.7
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 4.1e-217 759.2 485 76.1
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.6e-216 757.3 917 74.0
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.0e-212 744.6 1032 56.7
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 5.8e-211 738.8 1039 60.0
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.9e-210 735.7 825 65.9
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 8.6e-207 724.9 990 61.1
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.9e-201 707.2 485 72.0
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 3.2e-193 679.9 1039 59.9
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 1.6e-181 641.0 921 65.7
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 5.8e-171 605.9 482 62.2
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.3e-166 589.7 970 56.2
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 4.2e-161 573.2 838 70.0
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 4.5e-139 500.0 770 71.7
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.3e-135 487.6 1030 47.0
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 2.3e-135 487.6 1028 44.8
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.1e-132 478.8 443 58.2
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 1.2e-112 412.1 253 75.9
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.1e-100 370.5 336 63.4
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 4.7e-96 357.1 537 38.7
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 1.8e-95 355.1 887 35.7
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.7e-91 341.3 702 57.7
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.1e-89 335.9 205 77.6
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 2.9e-85 321.2 202 74.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.7e-83 314.7 374 51.9
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.2e-78 299.3 351 52.7
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 8.6e-74 283.1 449 37.2
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-69 268.9 492 37.2
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.5e-65 255.0 295 52.2
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 2.0e-62 245.4 266 54.1
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 1.1e-60 239.6 161 73.3
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.7e-53 215.7 213 57.3
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 6.7e-42 177.2 133 63.2
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 4.8e-40 171.0 107 75.7
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 8.2e-40 170.2 107 75.7
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 7.6e-38 163.7 99 77.8
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 2.2e-37 162.2 181 50.3
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.9e-37 161.8 93 83.9
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.2e-36 157.9 108 72.2
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.3e-34 152.9 93 77.4
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.8e-34 152.5 123 66.7
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 3.7e-32 144.8 93 75.3
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.8e-31 142.5 190 46.8
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.2e-28 131.3 79 75.9
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.6e-27 129.4 84 76.2
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 5.7e-25 120.9 105 61.9
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 3.0e-18 98.6 129 43.4
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.5e-14 84.7 121 40.5
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.2e-11 76.6 44 79.5
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 3.0e-10 72.0 173 31.8
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.9e-06 57.8 40 67.5


User provided reference genes

Program Settings