Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.6e-300 1035.4 561 100.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 3.5e-170 602.4 570 61.9
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.8e-166 590.1 580 60.7
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.3e-165 585.9 581 60.2
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 4.8e-164 582.0 543 61.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 9.1e-163 577.8 538 60.6
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 8.5e-161 571.2 542 59.8
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.1e-159 566.6 559 57.2
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.2e-157 560.8 562 55.5
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 7.5e-157 558.1 566 57.4
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.8e-156 555.4 576 57.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.4e-155 553.9 574 57.1
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 4.5e-154 548.9 566 56.4
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.5e-152 543.9 534 57.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 3.2e-152 542.7 565 56.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 9.5e-152 541.2 566 56.5
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.0e-150 537.7 563 53.6
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.3e-150 536.6 562 53.9
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 8.8e-150 534.6 554 57.2
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.5e-149 533.9 566 53.9
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 9.8e-149 531.2 569 54.1
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.8e-149 531.2 565 55.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.8e-148 529.6 565 56.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.0e-147 525.0 565 55.9
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.5e-146 522.7 573 55.0
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.3e-144 515.8 531 53.7
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-142 510.4 535 53.5
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.3e-142 510.0 570 56.8
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.0e-142 509.2 535 53.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.2e-142 508.8 570 56.8
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-141 507.7 571 52.2
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-141 507.7 541 53.0
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-141 507.7 561 54.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.4e-141 506.1 536 53.5
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 9.8e-141 504.6 537 55.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.3e-140 504.2 566 55.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.7e-140 503.8 574 56.3
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 6.4e-140 501.9 607 51.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 8.3e-140 501.5 570 51.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.4e-139 500.7 573 53.4
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.4e-139 500.0 573 53.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 2.4e-139 500.0 571 52.7
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.9e-138 495.4 565 55.2
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.3e-137 494.2 558 54.5
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 5.0e-137 492.3 571 51.3
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.9e-136 490.3 566 53.5
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.6e-135 487.3 558 50.9
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 6.2e-135 485.3 566 52.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.0e-134 484.6 492 56.3
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.4e-134 484.2 584 53.4
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 3.1e-134 483.0 569 53.6
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.6e-133 479.9 484 54.8
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 7.5e-133 478.4 534 52.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 3.7e-132 476.1 559 52.1
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.1e-131 474.6 555 49.0
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.2e-131 473.0 557 51.7
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 5.4e-131 472.2 540 51.1
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 9.2e-131 471.5 560 51.8
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.3e-129 467.6 563 49.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.7e-129 467.2 558 49.3
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 3.0e-129 466.5 580 51.7
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 3.3e-128 463.0 560 53.4
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.8e-127 459.9 570 51.6
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.6e-127 459.5 574 49.5
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 3.1e-126 456.4 563 48.7
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.0e-126 456.1 564 48.8
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 6.8e-126 455.3 567 48.9
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 3.4e-125 453.0 552 48.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.9e-124 449.9 559 47.4
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.7e-124 449.5 559 47.6
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.9e-123 447.2 557 47.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-123 447.2 469 53.7
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.9e-123 447.2 562 48.9
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.4e-123 446.8 557 47.9
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.1e-123 446.0 558 49.5
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 6.0e-122 442.2 552 50.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.9e-121 439.5 557 50.4
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.1e-120 438.0 574 48.1
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.1e-120 438.0 570 50.2
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.1e-118 431.4 566 46.6
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 6.8e-118 428.7 599 44.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-117 427.9 539 46.2
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.5e-117 427.6 573 46.8
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.6e-117 426.8 576 49.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.9e-115 420.6 582 46.6
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 4.1e-115 419.5 528 53.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 6.0e-114 415.6 603 45.4
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 7.8e-114 415.2 582 47.6
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 8.6e-113 411.8 573 45.2
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 8.6e-113 411.8 577 47.8
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 8.6e-113 411.8 582 45.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.9e-112 410.6 579 47.0
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 3.3e-112 409.8 302 65.9
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.3e-112 409.8 592 46.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 7.3e-112 408.7 566 45.1
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.1e-110 403.3 597 44.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.5e-109 401.0 576 45.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.4e-109 399.8 579 43.7
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 8.7e-105 385.2 305 61.6
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 6.9e-102 375.6 593 43.3
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.4e-99 367.9 552 48.0
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.0e-97 360.1 560 43.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 3.0e-97 360.1 586 41.3
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 6.7e-97 359.0 588 42.7
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 2.5e-96 357.1 570 42.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 7.4e-96 355.5 698 36.8
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 6.2e-95 352.4 545 41.7
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 4.0e-94 349.7 475 44.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 7.6e-93 345.5 492 42.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 3.8e-92 343.2 564 40.2
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.4e-91 340.5 559 39.7
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.2e-91 340.1 563 41.2
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.9e-86 322.4 529 41.4
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.8e-85 319.3 651 35.8
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.5e-77 294.7 459 42.5
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.0e-77 294.3 536 36.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 9.3e-75 285.4 590 38.0
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 7.9e-74 282.3 549 35.9
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-70 271.9 685 32.0
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.2e-59 233.8 488 37.3
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.7e-58 230.7 290 43.1
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.7e-58 230.7 520 34.2
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 3.6e-58 230.3 696 30.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 4.7e-58 229.9 207 56.5
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.0e-57 228.8 271 45.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.6e-56 224.2 430 42.6
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.4e-46 191.8 169 56.8
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.5e-44 183.0 548 29.9
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.2e-42 178.7 490 28.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.3e-36 157.9 288 32.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 5.5e-35 153.3 272 35.3
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.4e-33 148.7 162 58.6
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.2e-32 145.6 143 52.4
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 7.0e-30 136.3 160 54.4
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.3e-28 131.3 134 52.2
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 3.4e-24 117.5 260 30.4
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.5e-19 102.1 168 37.5
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.9e-19 101.7 81 58.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.9e-19 101.7 81 58.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 3.1e-17 94.4 126 45.2
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 9.9e-08 62.8 110 31.8
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 4.1e-06 57.4 71 45.1


User provided reference genes

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