Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.1e-170 603.2 302 100.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 6.0e-137 491.1 304 81.6
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 7.4e-135 484.2 304 80.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.1e-133 480.3 304 80.3
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.4e-133 479.2 308 79.9
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.1e-133 478.8 304 80.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 5.0e-131 471.5 305 79.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.1e-130 470.3 304 78.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.4e-130 469.9 304 77.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.2e-130 468.8 307 79.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.2e-130 468.8 304 77.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 7.1e-130 467.6 304 78.0
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 7.9e-129 464.2 305 75.7
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.0e-128 463.8 326 73.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.3e-128 463.4 305 78.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 2.3e-128 462.6 304 76.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.1e-128 461.5 305 77.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 8.7e-128 460.7 304 76.0
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.1e-127 460.3 305 77.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 2.5e-127 459.1 302 76.5
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 5.7e-127 458.0 306 75.8
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.8e-126 455.7 304 75.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.8e-126 455.7 302 76.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.8e-126 455.7 307 74.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 3.7e-126 455.3 303 75.6
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 8.2e-126 454.1 303 75.2
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.1e-125 453.8 303 75.9
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.1e-125 453.8 304 75.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.1e-125 453.8 305 75.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.4e-125 453.4 281 77.6
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.4e-125 452.6 269 84.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 3.1e-125 452.2 303 74.9
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 9.0e-125 450.7 311 76.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.5e-124 449.9 306 75.2
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.6e-124 449.1 302 74.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.6e-124 449.1 302 74.2
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.9e-124 448.0 304 73.4
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 5.0e-123 444.9 340 68.2
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 6.5e-123 444.5 307 73.0
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 6.5e-123 444.5 322 72.0
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.4e-122 443.4 290 73.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.4e-122 443.4 277 78.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 4.2e-122 441.8 304 74.3
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 4.2e-122 441.8 302 73.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.6e-121 439.9 277 79.4
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.6e-121 439.9 302 72.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.6e-121 439.9 306 72.2
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.1e-121 439.5 288 78.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.1e-121 439.5 315 71.1
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.1e-121 439.5 302 73.2
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.6e-121 438.7 305 73.4
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 7.9e-121 437.6 304 74.0
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 7.9e-121 437.6 358 66.5
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 3.0e-120 435.6 269 79.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.9e-120 435.3 270 78.5
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 8.8e-120 434.1 305 72.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 2.5e-119 432.6 307 71.0
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 9.7e-119 430.6 312 70.2
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 1.7e-118 429.9 304 71.4
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 8.2e-118 427.6 308 72.4
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 8.2e-118 427.6 305 70.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.1e-117 425.6 312 70.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.3e-117 424.9 275 78.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 9.1e-117 424.1 291 72.2
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.0e-116 422.9 302 69.5
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 5.9e-116 421.4 302 69.2
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 7.7e-116 421.0 303 70.3
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 7.7e-116 421.0 281 75.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.3e-115 420.2 280 72.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.9e-115 419.1 305 69.8
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.9e-115 419.1 300 74.3
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 5.0e-115 418.3 317 68.5
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 5.0e-115 418.3 302 69.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.2e-114 415.2 273 75.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-113 413.7 303 69.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.6e-113 413.3 302 69.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.6e-113 413.3 285 70.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 2.1e-113 412.9 303 69.3
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.1e-113 412.9 304 69.7
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 7.9e-113 411.0 285 70.5
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.4e-112 410.2 304 68.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.0e-112 409.1 303 68.6
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 5.1e-112 408.3 303 68.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.1e-111 407.1 284 70.1
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.8e-110 402.5 280 70.0
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.5e-108 396.7 311 66.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 4.5e-108 395.2 304 64.5
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 5.9e-108 394.8 328 63.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 3.8e-107 392.1 266 72.2
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.5e-107 391.0 329 63.2
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.9e-106 389.8 288 72.6
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 9.4e-106 387.5 304 65.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.8e-104 383.3 303 65.0
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.7e-102 375.6 329 62.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.6e-100 369.4 263 68.8
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.5e-100 368.6 280 65.7
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.0e-99 367.5 290 63.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.6e-97 360.1 279 66.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 3.6e-97 359.0 262 70.6
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.3e-96 356.3 259 68.0
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.5e-95 353.6 259 68.0
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.6e-95 352.8 264 70.1
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.4e-95 352.1 262 69.5
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.7e-95 351.7 255 70.2
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 2.4e-93 346.3 259 66.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 2.2e-91 339.7 276 63.4
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.9e-91 339.3 287 61.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.5e-90 337.0 215 77.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 9.4e-90 334.3 249 65.5
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 4.4e-87 325.5 215 76.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 5.7e-87 325.1 250 66.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.2e-86 323.2 203 79.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.1e-85 320.9 307 60.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.8e-85 320.1 280 57.9
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.8e-85 320.1 249 63.5
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 9.1e-85 317.8 270 61.5
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.9e-83 312.8 226 67.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 3.8e-83 312.4 257 65.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.6e-79 299.7 249 60.6
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 6.0e-68 261.9 220 62.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 5.1e-59 232.3 301 46.2
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.5e-58 230.7 248 51.6
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.6e-57 227.3 282 42.9
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 4.3e-50 202.6 121 83.5
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.2e-49 201.1 122 80.3
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 6.2e-49 198.7 275 42.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 6.4e-46 188.7 156 63.5
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.3e-43 181.0 261 40.6
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.3e-43 181.0 123 74.0
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-36 157.5 154 57.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.0e-35 154.8 118 65.3
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.9e-34 150.6 88 81.8
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.4e-29 133.7 86 73.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.3e-27 127.9 91 71.4
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 5.1e-27 125.9 110 61.8
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.5e-23 112.8 287 30.0
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.6e-20 104.4 260 31.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.5e-20 103.2 75 65.3
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 7.9e-20 102.1 216 30.6
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.0e-19 100.1 151 42.4
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.9e-19 99.8 291 31.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-17 94.7 107 50.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.1e-16 90.1 76 60.5
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 3.4e-15 86.7 206 29.1
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.3e-14 84.7 76 56.6
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-13 81.6 87 54.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.2e-13 80.1 51 68.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 4.2e-13 79.7 70 57.1
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 3.0e-11 73.6 310 24.5
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 3.9e-11 73.2 310 24.5
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 2.5e-10 70.5 47 66.0
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.8e-09 67.0 60 55.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 4.8e-09 66.2 39 76.9
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 1.4e-08 64.7 232 24.6
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 7.7e-07 58.9 78 44.9


User provided reference genes

Program Settings