Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 4.6e-299 1030.4 503 100.0
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 1.3e-237 826.2 538 75.1
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 1.7e-237 825.9 536 75.7
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 4.7e-235 817.8 538 74.7
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 8.8e-234 813.5 545 73.9
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 1.3e-232 809.7 537 73.6
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 1.7e-232 809.3 537 73.6
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 4.9e-232 807.7 540 75.0
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 1.4e-231 806.2 532 74.6
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 7.0e-231 803.9 538 74.9
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 2.0e-230 802.4 538 74.2
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 3.5e-230 801.6 533 74.5
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 1.3e-229 799.7 532 74.6
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 8.6e-229 797.0 538 73.2
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 1.5e-228 796.2 538 75.3
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.6e-227 792.7 531 73.8
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 1.6e-227 792.7 534 73.6
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 8.0e-227 790.4 539 72.7
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 4.0e-226 788.1 549 72.9
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 8.9e-226 786.9 562 70.1
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 6.4e-224 780.8 536 71.8
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 9.2e-223 776.9 538 71.7
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 3.3e-220 768.5 537 72.1
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 5.6e-220 767.7 531 72.5
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 7.3e-220 767.3 621 64.1
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.8e-218 762.7 538 70.8
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 1.8e-218 762.7 538 71.0
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 3.1e-218 761.9 538 71.0
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 2.0e-217 759.2 540 69.4
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 2.6e-217 758.8 539 71.8
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 1.7e-216 756.1 533 70.2
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 2.2e-216 755.7 514 73.2
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 2.4e-215 752.3 534 70.6
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 6.0e-214 747.7 541 69.7
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 6.0e-214 747.7 533 71.3
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 5.0e-213 744.6 521 70.6
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 6.6e-213 744.2 544 69.3
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 2.5e-212 742.3 533 71.7
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 4.3e-212 741.5 533 71.5
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 4.3e-212 741.5 532 70.5
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.6e-212 741.1 538 70.3
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 1.2e-211 740.0 536 69.6
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 2.1e-211 739.2 533 70.2
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 1.1e-210 736.9 535 70.3
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 8.9e-210 733.8 533 68.5
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 8.9e-210 733.8 533 69.4
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 2.6e-209 732.3 533 70.7
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 3.2e-207 725.3 540 68.1
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 1.2e-206 723.4 537 68.0
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 1.2e-206 723.4 540 67.4
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 6.0e-206 721.1 547 66.9
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 6.6e-205 717.6 539 67.3
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 8.6e-205 717.2 566 64.8
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 1.1e-204 716.8 544 67.1
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 1.1e-204 716.8 539 67.2
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 1.5e-204 716.5 537 67.0
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 1.5e-204 716.5 539 67.2
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 1.9e-204 716.1 489 72.6
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 3.1e-202 708.8 538 68.0
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 8.9e-202 707.2 539 66.4
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 1.2e-201 706.8 545 66.6
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 1.2e-201 706.8 540 66.7
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 1.2e-201 706.8 616 62.3
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 2.9e-200 702.2 543 66.1
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 2.4e-199 699.1 546 65.0
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 5.1e-197 691.4 548 63.1
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 8.6e-197 690.6 533 67.0
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 2.1e-195 686.0 628 57.6
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 3.1e-194 682.2 533 64.9
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 5.2e-194 681.4 573 61.3
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 6.4e-192 674.5 530 63.8
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 2.4e-191 672.5 503 68.4
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 3.0e-189 665.6 573 59.9
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 3.0e-189 665.6 573 59.9
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 2.5e-188 662.5 530 63.4
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 6.2e-187 657.9 535 64.1
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 8.1e-187 657.5 574 61.8
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 1.8e-186 656.4 530 62.6
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 4.0e-186 655.2 456 70.6
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.7e-184 649.8 533 64.2
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 7.4e-180 634.4 475 69.1
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 2.4e-178 629.4 435 74.5
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 2.4e-178 629.4 487 63.7
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 3.8e-176 622.1 535 62.1
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 5.5e-175 618.2 492 62.8
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 2.1e-174 616.3 503 62.2
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 4.3e-172 608.6 454 68.7
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 2.1e-171 606.3 506 60.9
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 1.7e-160 570.1 413 70.5
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.9e-159 566.6 463 62.9
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 4.6e-158 562.0 543 53.6
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 5.5e-151 538.5 360 73.1
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 1.1e-148 530.8 438 63.5
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.8e-133 480.3 294 76.2
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 8.5e-128 461.5 309 71.5
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 1.6e-121 440.7 342 67.8
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 7.7e-121 438.3 277 74.0
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 8.6e-120 434.9 503 49.1
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 2.4e-114 416.8 242 78.9
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.3e-112 411.0 301 67.4
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 2.8e-110 403.3 846 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 1.0e-109 401.4 971 31.0
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 4.0e-109 399.4 347 60.2
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 5.2e-109 399.1 884 32.2
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 9.8e-108 394.8 959 30.1
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.6e-102 377.5 893 31.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.4e-101 374.4 288 68.1
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 4.4e-84 316.2 235 68.9
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 9.0e-77 292.0 263 58.9
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 5.4e-74 282.7 245 60.4
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 1.1e-63 248.4 197 67.5
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 7.6e-60 235.7 270 43.7
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 4.0e-53 213.4 170 67.6
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 9.1e-29 132.5 80 77.5
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 1.8e-24 118.2 790 21.5
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 1.8e-24 118.2 130 55.4
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 4.1e-21 107.1 246 27.2
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 5.5e-18 96.7 103 50.5
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 2.6e-15 87.8 246 27.2
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 3.3e-15 87.4 95 51.6
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 2.7e-12 77.8 333 24.9
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 4.2e-10 70.5 52 69.2
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 6.1e-09 66.6 48 68.8
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 1.7e-06 58.5 42 61.9


User provided reference genes

Program Settings