Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.0e-122 443.7 272 100.0
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 4.0e-63 245.7 266 53.4
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.7e-61 240.4 153 79.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-60 237.7 264 53.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.8e-60 236.9 150 78.0
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 7.0e-60 235.0 152 75.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.0e-59 233.4 150 76.7
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.0e-59 233.4 150 73.3
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.3e-58 230.7 150 72.7
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 3.0e-58 229.6 154 74.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 8.6e-58 228.0 152 74.3
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.5e-57 227.3 152 74.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.5e-57 227.3 152 74.3
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.3e-57 226.1 152 74.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.3e-57 226.1 152 74.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 4.3e-57 225.7 170 70.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 7.3e-57 224.9 152 73.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.8e-56 223.0 154 72.7
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 4.7e-56 222.2 136 78.7
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 6.2e-56 221.9 153 73.2
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 4.0e-55 219.2 151 70.9
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 8.9e-55 218.0 152 73.0
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.4e-54 216.1 150 70.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.8e-54 215.3 133 78.2
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.8e-54 215.3 133 78.2
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 7.5e-54 214.9 159 68.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 7.5e-54 214.9 159 68.6
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.3e-53 214.2 129 79.1
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.9e-53 213.0 130 78.5
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 4.9e-53 212.2 150 68.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.1e-52 211.1 152 69.7
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.4e-52 209.9 153 68.6
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 4.1e-52 209.1 150 68.0
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.4e-52 208.8 151 66.9
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 9.2e-52 208.0 153 67.3
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 9.2e-52 208.0 150 69.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-51 206.8 151 66.2
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.7e-51 206.5 154 70.1
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.5e-51 206.1 151 66.2
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.8e-51 204.9 152 69.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.0e-50 204.5 181 56.9
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-50 203.8 151 65.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 8.6e-50 201.4 153 68.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 1.1e-49 201.1 152 67.1
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 1.9e-49 200.3 157 67.5
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.9e-49 200.3 131 75.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.5e-49 199.9 131 75.6
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 5.6e-49 198.7 151 66.2
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 5.6e-49 198.7 151 66.2
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 5.6e-49 198.7 151 66.2
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 9.5e-49 198.0 152 65.1
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 9.5e-49 198.0 128 74.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.2e-48 197.6 151 64.2
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.6e-48 197.2 152 65.8
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-48 197.2 150 64.0
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.1e-48 196.8 150 66.7
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.8e-48 196.4 160 63.1
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.8e-48 196.4 131 74.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.2e-48 195.3 156 62.8
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.4e-47 194.1 154 65.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.8e-47 193.7 134 70.1
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.1e-47 193.0 152 65.8
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.0e-47 192.6 152 66.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.2e-47 192.2 134 70.1
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 5.2e-47 192.2 224 50.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 8.9e-47 191.4 134 69.4
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.5e-46 190.7 154 62.3
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-46 190.7 154 62.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-46 190.7 154 62.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.5e-46 190.7 154 62.3
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.5e-46 190.7 154 62.3
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.6e-46 189.9 152 65.8
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.6e-46 189.9 130 71.5
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 3.4e-46 189.5 154 61.7
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.4e-46 189.5 134 69.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.4e-46 189.5 152 62.5
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.4e-46 189.5 154 61.7
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 7.5e-46 188.3 154 61.7
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 9.8e-46 188.0 152 64.5
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.3e-45 187.6 120 75.8
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 4.9e-45 185.7 155 61.3
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 8.3e-45 184.9 155 61.3
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.3e-45 184.9 155 61.3
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.4e-44 184.1 154 62.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.6e-43 180.6 134 64.9
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 5.1e-42 175.6 153 60.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.3e-41 172.6 123 68.3
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 7.3e-41 171.8 125 68.0
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.2e-40 171.0 150 56.7
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.8e-40 169.9 127 66.1
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.8e-40 169.9 127 66.1
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 4.7e-40 169.1 130 62.3
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.1e-39 167.9 262 43.5
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.8e-39 167.2 135 63.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 3.1e-39 166.4 124 62.9
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 4.0e-39 166.0 134 62.7
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.2e-39 165.6 135 63.0
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 5.2e-39 165.6 125 67.2
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 8.9e-39 164.9 120 69.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 8.9e-39 164.9 135 62.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.2e-38 164.5 131 63.4
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 4.9e-37 159.1 123 65.9
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.9e-37 159.1 138 60.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 4.6e-35 152.5 122 63.9
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.9e-34 149.4 134 58.2
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.5e-33 147.5 114 64.9
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.5e-33 146.7 110 68.2
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.4e-31 141.0 121 63.6
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.4e-31 140.2 95 72.6
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 3.1e-31 139.8 103 64.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.0e-30 137.1 105 63.8
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.8e-29 132.9 93 69.9
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 7.8e-27 125.2 94 64.9
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.6e-24 116.3 91 65.9
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.1e-23 114.8 77 67.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.7e-21 107.5 70 78.6
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 9.3e-20 101.7 77 63.6
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 1.8e-15 87.4 68 60.3
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 6.9e-15 85.5 85 52.9
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.9e-12 77.4 60 61.7
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 2.7e-11 73.6 122 38.5
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 3.5e-11 73.2 102 46.1
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 7.9e-11 72.0 123 35.0
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 5.6e-09 65.9 46 60.9
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 5.6e-09 65.9 74 47.3
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 5.6e-09 65.9 74 47.3
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 9.6e-09 65.1 63 49.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 4.8e-08 62.8 63 47.6
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.4e-07 60.5 121 39.7
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 4.5e-06 56.2 120 34.2


User provided reference genes

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