Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 2.2e-154 548.9 269 100.0
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.0e-99 366.3 258 69.8
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.8e-99 364.8 254 70.5
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.0e-95 354.0 249 71.5
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.9e-95 352.1 249 69.1
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.1e-92 344.0 256 68.4
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.8e-92 343.2 249 68.7
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 9.0e-92 340.9 249 68.3
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 9.0e-92 340.9 249 65.5
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.8e-91 338.2 276 64.1
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.2e-90 336.3 248 67.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 6.4e-90 334.7 249 67.1
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.4e-89 332.8 249 68.3
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 9.3e-89 330.9 249 64.3
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.6e-88 330.1 252 63.1
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-88 329.7 249 65.1
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 2.7e-88 329.3 249 66.3
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.7e-88 329.3 249 67.1
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.7e-88 329.3 249 65.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.9e-88 327.8 252 64.7
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 7.9e-88 327.8 245 66.5
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.3e-87 327.0 245 66.9
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.3e-87 326.2 249 64.7
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 6.7e-87 324.7 254 62.6
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-86 323.9 261 65.1
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-86 323.9 261 65.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.9e-86 323.2 250 64.0
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.5e-86 322.8 249 66.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 3.3e-86 322.4 256 61.7
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 7.4e-86 321.2 245 63.7
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.6e-85 320.1 258 64.0
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 2.1e-85 319.7 239 65.3
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 5.3e-84 315.1 239 64.4
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.5e-83 313.5 245 65.3
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.7e-82 310.1 250 62.8
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 2.2e-82 309.7 239 64.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.9e-82 308.5 249 63.9
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.9e-82 308.5 249 63.9
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 6.5e-82 308.1 249 64.3
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 5.5e-81 305.1 249 60.6
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.2e-80 303.9 249 61.8
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.6e-80 303.5 225 68.0
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 2.7e-80 302.8 249 62.2
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.0e-79 300.8 245 62.0
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.0e-79 300.8 253 60.5
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.8e-79 300.1 249 61.8
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.0e-79 299.3 250 60.4
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 3.9e-79 298.9 249 61.8
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 3.9e-79 298.9 246 61.4
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.9e-78 296.6 243 60.9
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.5e-78 296.2 238 63.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.3e-78 295.8 247 59.5
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.3e-77 293.9 247 59.1
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.6e-77 293.5 251 62.2
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 2.8e-77 292.7 249 57.8
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 3.7e-77 292.4 238 62.6
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.7e-77 292.4 228 65.4
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 3.7e-77 292.4 250 60.4
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-76 290.8 238 61.8
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-76 290.8 238 61.8
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-76 290.8 238 61.8
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.1e-76 290.8 238 61.8
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.1e-76 290.8 234 62.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.1e-76 290.8 253 59.3
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.4e-76 290.4 250 59.6
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.8e-76 290.0 229 60.7
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.8e-76 290.0 244 59.0
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 4.1e-76 288.9 249 57.8
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 4.1e-76 288.9 253 59.7
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 2.0e-75 286.6 247 59.5
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 4.5e-75 285.4 299 50.8
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.5e-75 285.4 252 57.1
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.0e-74 284.3 242 59.5
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.0e-74 284.3 256 57.4
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.9e-74 282.7 248 58.1
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 5.0e-74 282.0 242 57.0
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 3.2e-73 279.3 242 55.8
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 9.3e-73 277.7 245 58.8
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 8.7e-71 271.2 250 56.4
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.4e-68 263.1 221 61.1
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 4.5e-67 258.8 331 45.3
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.9e-66 256.1 194 67.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 6.5e-66 255.0 194 66.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.5e-66 255.0 194 62.4
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-65 254.2 194 61.9
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.4e-65 253.8 249 56.2
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.2e-65 252.3 194 61.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.4e-65 251.1 194 61.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-64 250.4 194 60.8
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.6e-64 250.4 247 55.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.3e-63 246.5 194 60.3
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 6.3e-61 238.4 249 55.0
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 8.2e-61 238.0 236 52.5
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 8.2e-61 238.0 232 53.0
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 4.5e-59 232.3 254 50.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-57 226.1 194 57.7
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.1e-56 223.4 250 46.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 6.1e-56 221.9 213 55.4
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.3e-55 219.9 242 50.0
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 3.9e-55 219.2 243 48.6
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 8.8e-55 218.0 252 52.8
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-53 213.8 194 55.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.1e-52 209.1 196 56.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.7e-48 196.4 232 45.7
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 3.6e-48 196.1 239 46.0
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 4.7e-48 195.7 218 52.3
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.7e-46 188.7 201 49.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 5.3e-44 182.2 147 65.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-39 165.6 123 64.2
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.6e-38 163.3 125 62.4
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.8e-37 159.8 186 46.2
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 8.3e-37 158.3 199 45.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 3.1e-36 156.4 233 38.6
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-35 154.1 110 67.3
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 7.2e-33 145.2 320 32.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.8e-31 140.6 118 57.6
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.5e-30 137.5 123 56.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.7e-29 134.0 151 49.7
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 8.9e-23 111.7 238 34.5
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 4.4e-22 109.4 239 32.6
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 8.3e-21 105.1 78 62.8
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 8.3e-21 105.1 78 62.8
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.0e-18 98.2 228 31.1
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 9.2e-12 75.1 193 28.5
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.9e-10 69.7 54 63.0
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.9e-10 69.7 54 63.0
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 5.6e-09 65.9 47 66.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 9.5e-09 65.1 41 70.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.3e-07 60.5 38 68.4
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 5.8e-06 55.8 96 40.6


User provided reference genes

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