Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 3.0e-145 518.5 253 100.0
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.1e-90 334.7 219 79.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 8.7e-89 330.9 216 77.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.2e-87 326.2 213 77.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.1e-86 322.0 222 74.3
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 4.8e-79 298.5 177 80.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 4.8e-79 298.5 177 80.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.0e-76 290.8 194 71.6
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.2e-76 289.7 173 77.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.1e-75 287.3 166 78.9
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 4.2e-75 285.4 179 72.6
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-72 276.9 174 71.8
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-72 276.9 174 71.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.6e-72 276.2 174 72.4
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.8e-71 271.9 180 73.3
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 4.8e-71 271.9 176 72.2
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.4e-70 270.4 181 69.1
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 3.1e-70 269.2 189 67.2
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.3e-70 268.5 180 71.1
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.3e-70 268.5 165 77.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 7.0e-70 268.1 174 70.7
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.5e-69 265.8 194 64.9
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.5e-69 265.8 183 67.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.3e-68 263.8 182 67.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 3.8e-68 262.3 184 67.9
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 6.5e-68 261.5 174 70.1
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.9e-67 260.0 164 74.4
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.5e-67 259.6 215 65.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 5.5e-67 258.5 182 67.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 7.2e-67 258.1 181 68.0
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.6e-66 256.9 173 69.4
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 5.2e-65 251.9 190 64.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.2e-64 250.8 177 65.0
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.6e-64 249.6 174 67.2
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.6e-64 249.6 174 67.2
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.7e-64 247.7 222 62.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.3e-63 247.3 191 62.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.7e-63 246.9 180 63.3
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.8e-63 246.1 209 58.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 4.8e-63 245.4 172 70.3
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 8.2e-63 244.6 182 61.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.8e-62 243.4 183 61.2
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 2.4e-62 243.0 160 70.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.1e-62 242.7 163 66.9
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.1e-62 242.7 200 59.0
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.1e-62 242.3 200 59.5
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 4.1e-62 242.3 181 63.0
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 4.1e-62 242.3 163 67.5
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.3e-62 241.9 164 67.1
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.3e-62 241.9 163 66.9
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.6e-61 240.4 164 67.7
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.0e-60 237.7 163 69.9
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.3e-60 237.3 213 53.1
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.9e-60 236.1 163 65.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.8e-60 235.7 163 65.6
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 5.0e-60 235.3 163 65.6
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 5.0e-60 235.3 163 65.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 8.5e-60 234.6 163 65.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-59 234.2 163 65.6
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-59 234.2 169 63.9
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.2e-59 232.3 174 62.1
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-58 230.7 194 56.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.7e-58 229.6 148 72.3
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.6e-58 229.2 162 63.6
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 8.0e-58 228.0 162 63.6
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 8.0e-58 228.0 162 63.6
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 8.0e-58 228.0 162 63.6
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.0e-57 226.1 162 64.2
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.2e-57 225.3 154 64.3
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 6.8e-57 224.9 162 63.0
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.0e-56 223.4 154 64.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-55 220.7 162 60.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-55 220.7 162 60.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.3e-55 220.7 151 65.6
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.7e-55 220.3 162 61.7
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.8e-55 218.8 148 66.9
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.1e-54 217.6 162 61.7
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.1e-54 217.6 135 71.1
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.1e-54 216.1 162 60.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.5e-53 212.6 162 59.3
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.9e-53 211.8 191 52.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 8.6e-52 208.0 179 54.7
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.3e-49 199.9 184 52.2
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.3e-49 199.9 193 52.8
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.0e-49 199.5 167 54.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 7.5e-48 194.9 176 51.7
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.7e-47 192.6 159 56.6
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 4.9e-47 192.2 159 57.2
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.3e-47 191.8 189 52.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-45 187.6 130 64.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.3e-44 183.3 162 53.7
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 2.9e-44 183.0 202 46.0
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 6.6e-44 181.8 221 42.1
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 8.6e-44 181.4 197 46.2
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.5e-43 179.9 168 48.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.5e-43 179.9 169 54.4
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 4.3e-43 179.1 172 53.5
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-42 177.2 118 68.6
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.1e-42 175.3 118 68.6
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 8.0e-42 174.9 217 41.9
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 4.0e-41 172.6 218 40.8
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.5e-40 170.6 188 47.9
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.5e-40 170.6 203 41.4
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.0e-40 170.2 169 48.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.4e-40 169.5 169 48.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 9.8e-40 167.9 180 47.2
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-39 167.5 163 47.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.3e-39 167.5 190 44.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.9e-39 166.4 163 47.2
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.7e-39 166.0 167 49.1
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.1e-38 164.5 167 44.3
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-38 164.1 110 68.2
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.4e-38 163.3 184 47.3
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.2e-38 162.9 114 64.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 4.1e-38 162.5 176 46.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 9.2e-38 161.4 184 42.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.7e-37 159.8 169 47.3
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.5e-37 159.5 182 45.1
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.6e-37 159.1 111 65.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.6e-37 159.1 167 49.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.3e-36 156.8 164 45.1
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.0e-36 156.4 142 48.6
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 6.6e-36 155.2 163 45.4
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.9e-35 153.7 173 42.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.3e-35 152.9 164 45.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 7.3e-35 151.8 166 46.4
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 7.3e-35 151.8 177 40.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.6e-34 149.4 199 41.7
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.1e-33 147.9 157 45.2
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 3.1e-33 146.4 195 39.5
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 8.9e-33 144.8 171 39.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.7e-31 139.4 170 38.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.4e-30 137.5 164 37.8
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.1e-30 136.0 175 37.7
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-29 134.4 188 38.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.0e-29 133.7 158 43.7
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.0e-29 133.7 163 41.7
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-29 131.7 182 40.1
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.0e-28 129.8 188 37.2
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.9e-28 129.4 156 37.8
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.0e-28 129.0 169 39.6
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.0e-28 129.0 172 41.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 6.6e-28 128.6 180 34.4
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-26 124.4 184 39.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.8e-25 120.6 189 37.0
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.2e-25 119.0 109 47.7
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.2e-24 117.9 109 47.7
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.2e-22 109.8 100 53.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 9.2e-22 108.2 197 33.0
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 9.2e-22 108.2 109 44.0
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.5e-21 106.3 114 38.6
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 4.3e-19 99.4 150 38.0
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-16 91.3 76 56.6
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.0e-16 90.5 60 68.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-15 87.4 148 39.9
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 3.2e-14 83.2 142 33.1
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 3.3e-11 73.2 56 62.5
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 1.2e-10 71.2 137 31.4
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.7e-10 69.3 149 27.5
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-09 67.8 56 57.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.4e-09 67.0 44 68.2
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 5.2e-09 65.9 46 60.9
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.5e-08 64.3 192 23.4
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 7.6e-08 62.0 64 43.8
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.4e-06 55.8 53 49.1
Zm00001eb005260 Zea mays HOM05D004214 ORTHO05D004963 7.1e-06 55.5 55 49.1


User provided reference genes

Program Settings