Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 2.4e-32 141.7 82 100.0
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 96.3
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.2e-31 139.4 82 98.8
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-31 138.7 82 97.6
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 2.1e-31 138.7 82 97.6
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.1e-31 138.7 82 97.6
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 3.5e-31 137.9 82 97.6
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 4.6e-31 137.5 82 96.3
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 7.8e-31 136.7 82 96.3
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.3e-30 136.0 82 95.1
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 3.9e-30 134.4 79 98.7
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 6.6e-30 133.7 82 93.9
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 8.7e-30 133.3 82 95.1
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 1.5e-29 132.5 82 96.3
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.5e-29 132.5 82 91.5
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.5e-29 132.5 82 95.1
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 3.3e-29 131.3 82 92.7
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 4.3e-29 131.0 82 92.7
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 4.3e-29 131.0 82 91.5
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 4.3e-29 131.0 78 97.4
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 5.6e-29 130.6 77 97.4
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 5.6e-29 130.6 77 98.7
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 9.6e-29 129.8 81 92.6
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 2.1e-28 128.6 82 95.1
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 3.6e-28 127.9 82 76.8
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.4e-27 125.9 77 96.1
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 1.8e-27 125.6 80 91.2
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 3.1e-27 124.8 82 72.0
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 9.0e-27 123.2 82 92.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-26 122.1 81 91.4
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-26 122.1 81 91.4
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-26 121.7 81 90.1
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-26 121.7 81 90.1
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.2e-25 118.6 72 95.8
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 2.2e-25 118.6 82 84.1
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.9e-25 117.5 76 93.4
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.9e-25 117.5 76 93.4
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.9e-25 117.5 76 93.4
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.9e-25 117.5 76 93.4
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.9e-25 117.5 76 93.4
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.9e-25 117.5 75 94.7
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.4e-24 115.9 82 67.1
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 3.2e-24 114.8 71 94.4
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 3.2e-24 114.8 74 91.9
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 7.9e-23 110.2 70 94.3
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-22 108.6 69 94.2
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-22 108.6 69 94.2
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-22 108.6 69 94.2
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 3.0e-22 108.2 81 66.7
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.9e-22 107.8 78 84.6
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 5.1e-22 107.5 69 73.9
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 8.7e-22 106.7 47 100.0
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 8.7e-22 106.7 47 100.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 8.7e-22 106.7 47 100.0
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 2.5e-21 105.1 69 89.9
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 4.3e-21 104.4 46 100.0
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 2.1e-20 102.1 81 61.7
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 3.7e-20 101.3 47 95.7
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 8.1e-20 100.1 47 95.7
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-19 99.8 47 95.7
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 3.1e-19 98.2 82 63.4
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 3.1e-19 98.2 82 63.4
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 4.0e-19 97.8 82 80.5
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-18 96.3 82 63.4
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-18 96.3 82 63.4
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-18 96.3 82 63.4
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.4e-18 94.7 82 58.5
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-15 85.9 38 94.7
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 8.7e-14 80.1 54 70.4
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 8.7e-14 80.1 57 68.4
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.1e-13 79.7 36 97.2
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.5e-13 79.3 55 69.1
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.9e-13 79.0 55 69.1
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-13 79.0 34 100.0
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 2.5e-13 78.6 33 100.0
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 4.3e-13 77.8 55 69.1
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 4.8e-12 74.3 55 67.3
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 1.1e-11 73.2 55 63.6
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.8e-11 72.4 55 65.5
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 1.2e-10 69.7 52 65.4
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-10 68.6 28 100.0
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.4e-10 68.2 55 61.8
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 8.4e-09 63.5 30 90.0
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 1.4e-08 62.8 47 61.7
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 2.7e-07 58.5 49 61.2
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 6.1e-07 57.4 51 54.9
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 1.8e-06 55.8 44 59.1
Medtr6g080310 Medicago truncatula HOM05D001200 ORTHO05D002731 8.7e-06 53.5 30 76.7


User provided reference genes

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