Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G947.1 Capsicum annuum HOM05D000213 ORTHO05D000985 2.3e-67 258.8 135 100.0
CAN.G566.68 Capsicum annuum HOM05D000213 ORTHO05D000985 6.6e-43 177.6 165 63.6
CAN.G566.71 Capsicum annuum HOM05D000213 ORTHO05D000985 5.1e-35 151.4 172 54.7
CAN.G947.2 Capsicum annuum HOM05D000213 ORTHO05D000985 5.6e-34 147.9 172 55.2
CAN.G947.3 Capsicum annuum HOM05D000213 ORTHO05D000985 2.9e-22 109.0 130 54.6
CAN.G566.73 Capsicum annuum HOM05D000213 ORTHO05D115193 2.1e-20 102.8 119 52.9
CAN.G566.70 Capsicum annuum HOM05D000213 ORTHO05D000985 3.6e-17 92.0 73 67.1
Nitab4.5_0011148g0010 Nicotiana tabacum HOM05D000213 ORTHO05D000985 4.0e-16 88.6 163 41.7
PGSC0003DMG400029371 Solanum tuberosum HOM05D000213 ORTHO05D000985 5.3e-16 88.2 151 43.7
Nitab4.5_0001159g0160 Nicotiana tabacum HOM05D000213 ORTHO05D000985 9.0e-16 87.4 159 40.9
CAN.G566.72 Capsicum annuum HOM05D000213 ORTHO05D000985 1.5e-15 86.7 114 51.8
Peaxi162Scf00459g00841 Petunia axillaris HOM05D000213 ORTHO05D000985 3.4e-15 85.5 144 40.3
Cc08_g06420 Coffea canephora HOM05D000213 ORTHO05D000985 4.2e-13 78.6 158 36.7
Nn8g40438 Nelumbo nucifera HOM05D000213 ORTHO05D000985 2.1e-12 76.3 115 43.5
Solyc12g096350.2 Solanum lycopersicum HOM05D000213 ORTHO05D000985 7.9e-12 74.3 179 35.8
Sopen12g032210 Solanum pennellii HOM05D000213 ORTHO05D000985 7.9e-12 74.3 174 36.2
Nitab4.5_0007342g0050 Nicotiana tabacum HOM05D000213 ORTHO05D000985 1.0e-11 73.9 87 44.8
THA.LOC104803868 Tarenaya hassleriana HOM05D000213 ORTHO05D000985 1.3e-11 73.6 147 36.7
BcaNung04130 Brassica carinata HOM05D000213 ORTHO05D000985 3.0e-11 72.4 147 36.1
MSTRG.11805 Avicennia marina HOM05D000213 ORTHO05D000985 5.1e-11 71.6 164 33.5
Migut.A00430 Erythranthe guttata HOM05D000213 ORTHO05D000985 5.1e-11 71.6 165 35.2
Actinidia22258 Actinidia chinensis HOM05D000213 ORTHO05D000985 6.7e-11 71.2 71 52.1
Peaxi162Scf00045g01641 Petunia axillaris HOM05D000213 ORTHO05D000985 6.7e-11 71.2 138 39.9
Eucgr.C04011 Eucalyptus grandis HOM05D000213 ORTHO05D000985 8.7e-11 70.9 93 43.0
Nitab4.5_0000555g0130 Nicotiana tabacum HOM05D000213 ORTHO05D000985 1.1e-10 70.5 87 42.5
Potri.018G139300 Populus trichocarpa HOM05D000213 ORTHO05D000985 1.1e-10 70.5 137 36.5
TAR626G0788 Trochodendron aralioides HOM05D000213 ORTHO05D000985 1.5e-10 70.1 70 51.4
GSVIVG01033188001 Vitis vinifera HOM05D000213 ORTHO05D000985 1.5e-10 70.1 83 42.2
Aa31sc538G30 Aethionema arabicum HOM05D000213 ORTHO05D000985 1.9e-10 69.7 149 37.6
CSS0019338 Camellia sinensis var. sinensis HOM05D000213 ORTHO05D000985 1.9e-10 69.7 156 34.6
COL.COLO4_19021 Corchorus olitorius HOM05D000213 ORTHO05D000985 1.9e-10 69.7 93 40.9
Manes.16G134800 Manihot esculenta HOM05D000213 ORTHO05D000985 1.9e-10 69.7 67 52.2
Oeu053855.1 Olea europaea HOM05D000213 ORTHO05D000985 1.9e-10 69.7 69 49.3
AL4G15120 Arabidopsis lyrata HOM05D000213 ORTHO05D000985 2.5e-10 69.3 117 41.0
BcaB06g27985 Brassica carinata HOM05D000213 ORTHO05D000985 2.5e-10 69.3 124 38.7
Cfa013475 Carpinus fangiana HOM05D000213 ORTHO05D000985 2.5e-10 69.3 135 37.8
Gorai.010G121800 Gossypium raimondii HOM05D000213 ORTHO05D000985 2.5e-10 69.3 94 46.8
CSS0005905 Camellia sinensis var. sinensis HOM05D000213 ORTHO05D000985 3.3e-10 68.9 156 34.6
MELO3C003622.2 Cucumis melo HOM05D000213 ORTHO05D000985 3.3e-10 68.9 67 53.7
Gohir.D06G107100 Gossypium hirsutum HOM05D000213 ORTHO05D000985 3.3e-10 68.9 94 46.8
AL7G20480 Arabidopsis lyrata HOM05D000213 ORTHO05D000985 4.3e-10 68.6 162 34.0
BolC7t46322H Brassica oleracea HOM05D000213 ORTHO05D000985 4.3e-10 68.6 157 35.7
Gohir.A07G002000 Gossypium hirsutum HOM05D000213 ORTHO05D000985 4.3e-10 68.6 92 41.3
PGSC0003DMG400009530 Solanum tuberosum HOM05D000213 ORTHO05D000985 4.3e-10 68.6 155 33.5
CsaV3_3G047140 Cucumis sativus L. HOM05D000213 ORTHO05D000985 5.6e-10 68.2 67 52.2
SGA_v2.0_scaffold193G40666 Striga asiatica HOM05D000213 ORTHO05D000985 5.6e-10 68.2 82 42.7
BcaC02g08440 Brassica carinata HOM05D000213 ORTHO05D000985 7.4e-10 67.8 124 40.3
C04p54170 Brassica napus HOM05D000213 ORTHO05D000985 7.4e-10 67.8 124 40.3
Dinv08675 Davidia involucrata HOM05D000213 ORTHO05D000985 7.4e-10 67.8 70 48.6
Gohir.A06G105100 Gossypium hirsutum HOM05D000213 ORTHO05D000985 7.4e-10 67.8 94 45.7
Sp4g03560 Schrenkiella parvula HOM05D000213 ORTHO05D000985 7.4e-10 67.8 67 53.7
GSVIVG01029265001 Vitis vinifera HOM05D000213 ORTHO05D000985 7.4e-10 67.8 71 47.9
AT4G31550 Arabidopsis thaliana HOM05D000213 ORTHO05D000985 9.6e-10 67.4 76 47.4
BcaNung04581 Brassica carinata HOM05D000213 ORTHO05D000985 9.6e-10 67.4 151 33.1
A04p18920 Brassica napus HOM05D000213 ORTHO05D000985 9.6e-10 67.4 68 52.9
Thhalv10000242m.g Eutrema salsugineum HOM05D000213 ORTHO05D000985 9.6e-10 67.4 67 53.7
Carub.0004s0396 Capsella rubella HOM05D000213 ORTHO05D000985 1.3e-09 67.0 110 40.9
Duzib168G0527 Durio zibethinus HOM05D000213 ORTHO05D000985 1.3e-09 67.0 67 52.2
THA.LOC104819935 Tarenaya hassleriana HOM05D000213 ORTHO05D000985 1.3e-09 67.0 67 52.2
ClCG05G026460 Citrullus lanatus HOM05D000213 ORTHO05D000985 1.6e-09 66.6 67 50.7
Os04g0287400 Oryza sativa ssp. japonica HOM05D000213 ORTHO05D000985 1.6e-09 66.6 149 38.3
SHI48743 Sapria himalayana HOM05D000213 ORTHO05D000985 1.6e-09 66.6 90 40.0
FvH4_4g06830 Fragaria vesca HOM05D000213 ORTHO05D000985 2.1e-09 66.2 133 36.8
Potri.018G008500 Populus trichocarpa HOM05D000213 ORTHO05D000985 2.1e-09 66.2 92 43.5
Sabra06G0053700 Salix brachista HOM05D000213 ORTHO05D000985 2.1e-09 66.2 137 36.5
Thecc.09G008400 Theobroma cacao HOM05D000213 ORTHO05D000985 2.1e-09 66.2 67 53.7
Aa31LG2G18800 Aethionema arabicum HOM05D000213 ORTHO05D000985 2.8e-09 65.9 77 45.5
MSTRG.25785 Avicennia marina HOM05D000213 ORTHO05D000985 2.8e-09 65.9 167 32.3
C07p58730 Brassica napus HOM05D000213 ORTHO05D000985 2.8e-09 65.9 96 42.7
Potri.006G072400 Populus trichocarpa HOM05D000213 ORTHO05D000985 2.8e-09 65.9 137 35.0
AT2G24570 Arabidopsis thaliana HOM05D000213 ORTHO05D000985 3.7e-09 65.5 119 40.3
CiPaw.07G199600 Carya illinoinensis HOM05D000213 ORTHO05D000985 3.7e-09 65.5 151 34.4
Solyc08g006320.4 Solanum lycopersicum HOM05D000213 ORTHO05D000985 3.7e-09 65.5 151 33.8
Carub.0007s0902 Capsella rubella HOM05D000213 ORTHO05D000985 4.8e-09 65.1 156 32.1
Haze_22053 Corylus avellana HOM05D000213 ORTHO05D000985 4.8e-09 65.1 66 51.5
Gohir.D07G000300 Gossypium hirsutum HOM05D000213 ORTHO05D000985 4.8e-09 65.1 92 41.3
Oeu018563.1 Olea europaea HOM05D000213 ORTHO05D000985 4.8e-09 65.1 69 49.3
Sed0028224 Sechium edule HOM05D000213 ORTHO05D000985 4.8e-09 65.1 107 37.4
THA.LOC104803623 Tarenaya hassleriana HOM05D000213 ORTHO05D000985 4.8e-09 65.1 148 35.1
BolC4t26968H Brassica oleracea HOM05D000213 ORTHO05D000985 6.2e-09 64.7 124 39.5
Prupe.1G459100 Prunus persica HOM05D000213 ORTHO05D000985 6.2e-09 64.7 73 45.2
RcHm_v2.0_Chr4g0398741 Rosa chinensis HOM05D000213 ORTHO05D000985 6.2e-09 64.7 65 50.8
Ciclev10008836m.g Citrus clementina HOM05D000213 ORTHO05D000985 8.2e-09 64.3 67 47.8
FAN12G4060 Fragaria x ananassa HOM05D000213 ORTHO05D000985 8.2e-09 64.3 65 49.2
Gorai.001G002200 Gossypium raimondii HOM05D000213 ORTHO05D000985 8.2e-09 64.3 92 41.3
Gorai.009G066900 Gossypium raimondii HOM05D000213 ORTHO05D000985 8.2e-09 64.3 79 40.5
BcaB03g12704 Brassica carinata HOM05D000213 ORTHO05D000985 1.1e-08 63.9 133 33.8
Sed0010336 Sechium edule HOM05D000213 ORTHO05D000985 1.1e-08 63.9 66 50.0
A01p06680 Brassica napus HOM05D000213 ORTHO05D000985 1.4e-08 63.5 69 49.3
Cpa.g.sc768.1 Carica papaya HOM05D000213 ORTHO05D000985 1.4e-08 63.5 69 47.8
CDE04G3438 Ceratophyllum demersum HOM05D000213 ORTHO05D000985 1.4e-08 63.5 84 41.7
Actinidia06429 Actinidia chinensis HOM05D000213 ORTHO05D000985 1.8e-08 63.2 152 36.2
CDE07G0846 Ceratophyllum demersum HOM05D000213 ORTHO05D000985 1.8e-08 63.2 68 45.6
Duzib187G0990 Durio zibethinus HOM05D000213 ORTHO05D000985 1.8e-08 63.2 66 50.0
EL10Ac2g02415 Beta vulgaris HOM05D000213 ORTHO05D000985 2.4e-08 62.8 162 29.6
BcaC01g01079 Brassica carinata HOM05D000213 ORTHO05D000985 2.4e-08 62.8 88 40.9
A03p60850 Brassica napus HOM05D000213 ORTHO05D000985 2.4e-08 62.8 99 40.4
C03p87840 Brassica napus HOM05D000213 ORTHO05D000985 2.4e-08 62.8 88 40.9
BolC3t21098H Brassica oleracea HOM05D000213 ORTHO05D000985 2.4e-08 62.8 88 40.9
BraA03t15121Z Brassica rapa HOM05D000213 ORTHO05D000985 2.4e-08 62.8 99 40.4
CARHR117430 Cardamine hirsuta HOM05D000213 ORTHO05D000985 2.4e-08 62.8 112 40.2
Gohir.D05G066100 Gossypium hirsutum HOM05D000213 ORTHO05D000985 2.4e-08 62.8 79 41.8
MD15G1106600 Malus domestica HOM05D000213 ORTHO05D000985 2.4e-08 62.8 73 45.2
MD16G1244300 Malus domestica HOM05D000213 ORTHO05D000985 2.4e-08 62.8 62 53.2
QL12p025384 Quercus lobata HOM05D000213 ORTHO05D000985 2.4e-08 62.8 82 40.2
VMungo1309G0672 Vigna mungo HOM05D000213 ORTHO05D000985 2.4e-08 62.8 77 45.5
Aqoxy7G02922 Aquilegia oxysepala HOM05D000213 ORTHO05D000985 3.1e-08 62.4 72 43.1
BraA01t00627Z Brassica rapa HOM05D000213 ORTHO05D000985 3.1e-08 62.4 95 41.1
Prupe.1G071400 Prunus persica HOM05D000213 ORTHO05D000985 3.1e-08 62.4 140 35.7
BcaC09g51935 Brassica carinata HOM05D000213 ORTHO05D000985 4.0e-08 62.0 89 40.4
C01p07450 Brassica napus HOM05D000213 ORTHO05D000985 4.0e-08 62.0 68 50.0
BolC1t00728H Brassica oleracea HOM05D000213 ORTHO05D000985 4.0e-08 62.0 89 40.4
Dinv25479 Davidia involucrata HOM05D000213 ORTHO05D000985 4.0e-08 62.0 138 32.6
RcHm_v2.0_Chr6g0305101 Rosa chinensis HOM05D000213 ORTHO05D000985 4.0e-08 62.0 71 45.1
Sp7g29380 Schrenkiella parvula HOM05D000213 ORTHO05D000985 4.0e-08 62.0 64 51.6
BraA04t17494Z Brassica rapa HOM05D000213 ORTHO05D000985 5.3e-08 61.6 108 39.8
CARHR239430 Cardamine hirsuta HOM05D000213 ORTHO05D000985 5.3e-08 61.6 112 40.2
MBI14_g09154_MAGBIO Magnolia biondii HOM05D000213 ORTHO05D000985 5.3e-08 61.6 69 49.3
MBI14_g34974_MAGBIO Magnolia biondii HOM05D000213 ORTHO05D000985 5.3e-08 61.6 69 49.3
Phvul.009G233900 Phaseolus vulgaris HOM05D000213 ORTHO05D000985 5.3e-08 61.6 85 42.4
TWI34G1907 Tripterygium wilfordii HOM05D000213 ORTHO05D000985 5.3e-08 61.6 63 49.2
FAN07G2755 Fragaria x ananassa HOM05D000213 ORTHO05D000985 6.9e-08 61.2 122 36.9
arahy.Tifrunner.gnm1.ann1.091A4A Arachis hypogaea HOM05D000213 ORTHO05D000985 9.0e-08 60.8 114 38.6
FAN22G1665 Fragaria x ananassa HOM05D000213 ORTHO05D000985 9.0e-08 60.8 68 45.6
arahy.Tifrunner.gnm1.ann1.ZN7Y7A Arachis hypogaea HOM05D000213 ORTHO05D000985 1.2e-07 60.5 82 42.7
Ca_02133_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000985 1.2e-07 60.5 96 37.5
FvH4_2g36730 Fragaria vesca HOM05D000213 ORTHO05D000985 1.2e-07 60.5 71 43.7
FAN27G0400 Fragaria x ananassa HOM05D000213 ORTHO05D000985 1.2e-07 60.5 71 43.7
MBI16_g09342_MAGBIO Magnolia biondii HOM05D000213 ORTHO05D000985 1.2e-07 60.5 142 35.2
Psat4g013640 Pisum sativum HOM05D000213 ORTHO05D000985 1.2e-07 60.5 74 41.9
Sed0003080 Sechium edule HOM05D000213 ORTHO05D000985 1.2e-07 60.5 129 31.0
HPP92_017132 Vanilla planifolia HOM05D000213 ORTHO05D000985 1.2e-07 60.5 148 33.8
A08p18560 Brassica napus HOM05D000213 ORTHO05D000985 1.5e-07 60.1 107 36.4
BraA08t33818Z Brassica rapa HOM05D000213 ORTHO05D000985 1.5e-07 60.1 107 36.4
CiPaw.07G211500 Carya illinoinensis HOM05D000213 ORTHO05D000985 1.5e-07 60.1 66 48.5
FAN15G1367 Fragaria x ananassa HOM05D000213 ORTHO05D000985 1.5e-07 60.1 71 43.7
MD08G1127200 Malus domestica HOM05D000213 ORTHO05D000985 1.5e-07 60.1 73 43.8
arahy.Tifrunner.gnm1.ann1.FP3Q5V Arachis hypogaea HOM05D000213 ORTHO05D000985 2.0e-07 59.7 151 29.8
PGR142G3555 Punica granatum HOM05D000213 ORTHO05D000985 2.0e-07 59.7 80 41.2
CiPaw.08G031100 Carya illinoinensis HOM05D000213 ORTHO05D000985 2.6e-07 59.3 150 31.3
Gohir.A05G063500 Gossypium hirsutum HOM05D000213 ORTHO05D000985 2.6e-07 59.3 79 39.2
MD13G1239100 Malus domestica HOM05D000213 ORTHO05D000985 2.6e-07 59.3 67 47.8
PSO170G5439 Papaver somniferum HOM05D000213 ORTHO05D000985 2.6e-07 59.3 99 34.3
CANSAT25G3190 Cannabis sativa HOM05D000213 ORTHO05D000985 3.4e-07 58.9 66 45.5
CDE05G2598 Ceratophyllum demersum HOM05D000213 ORTHO05D000985 3.4e-07 58.9 67 47.8
PSO063G2644 Papaver somniferum HOM05D000213 ORTHO05D000985 3.4e-07 58.9 99 34.3
arahy.Tifrunner.gnm1.ann1.3RY6J8 Arachis hypogaea HOM05D000213 ORTHO05D000985 4.5e-07 58.5 151 29.1
Ca_21266_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000985 4.5e-07 58.5 87 39.1
ClCG06G013780 Citrullus lanatus HOM05D000213 ORTHO05D000985 4.5e-07 58.5 139 32.4
Glyma.09G061900 Glycine max HOM05D000213 ORTHO05D000985 4.5e-07 58.5 76 43.4
Glyma.13G102000 Glycine max HOM05D000213 ORTHO05D000985 4.5e-07 58.5 81 39.5
Sabra18G0015600 Salix brachista HOM05D000213 ORTHO05D000985 4.5e-07 58.5 65 44.6
Haze_21758 Corylus avellana HOM05D000213 ORTHO05D000985 5.8e-07 58.2 72 43.1
Hma1.2p1_0235F.1_g098940 Hydrangea macrophylla HOM05D000213 ORTHO05D000985 5.8e-07 58.2 65 41.5
Hma1.2p1_3498F.1_g336423 Hydrangea macrophylla HOM05D000213 ORTHO05D000985 5.8e-07 58.2 65 41.5
CDE05G1828 Ceratophyllum demersum HOM05D000213 ORTHO05D000985 7.6e-07 57.8 67 46.3
FAN17G2331 Fragaria x ananassa HOM05D000213 ORTHO05D000985 7.6e-07 57.8 131 32.8
Glyma.17G057100 Glycine max HOM05D000213 ORTHO05D000985 7.6e-07 57.8 81 39.5
TPR.G5418 Trifolium pratense HOM05D000213 ORTHO05D000985 7.6e-07 57.8 77 40.3
Dinv41204 Davidia involucrata HOM05D000213 ORTHO05D000985 1.0e-06 57.4 67 43.3
Lalb_Chr23g0276611 Lupinus albus HOM05D000213 ORTHO05D000985 1.0e-06 57.4 145 34.5
Hma1.2p1_0726F.1_g209000 Hydrangea macrophylla HOM05D000213 ORTHO05D000985 1.3e-06 57.0 67 43.3
Lj4g0020378 Lotus japonicus HOM05D000213 ORTHO05D000985 1.3e-06 57.0 86 37.2
TWI63G0345 Tripterygium wilfordii HOM05D000213 ORTHO05D000985 1.3e-06 57.0 65 46.2
HPP92_010316 Vanilla planifolia HOM05D000213 ORTHO05D000985 1.7e-06 56.6 159 34.0
Cfa013281 Carpinus fangiana HOM05D000213 ORTHO05D000985 2.9e-06 55.8 114 34.2
Lalb_Chr11g0074661 Lupinus albus HOM05D000213 ORTHO05D000985 3.8e-06 55.5 75 40.0
Phvul.003G139500 Phaseolus vulgaris HOM05D000213 ORTHO05D000985 3.8e-06 55.5 83 37.3
VMungo1215G1806 Vigna mungo HOM05D000213 ORTHO05D000985 3.8e-06 55.5 86 36.0
PGR044G1158 Punica granatum HOM05D000213 ORTHO05D000985 4.9e-06 55.1 69 43.5
CANSAT11G2460 Cannabis sativa HOM05D000213 ORTHO05D000985 6.5e-06 54.7 70 41.4
ATR0580G342 Amborella trichopoda HOM05D000213 ORTHO05D000985 8.4e-06 54.3 72 40.3
FAN20G2276 Fragaria x ananassa HOM05D000213 ORTHO05D000985 8.4e-06 54.3 76 40.8


User provided reference genes

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