Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 6.4e-70 267.3 137 100.0
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 7.1e-61 237.3 139 89.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 7.1e-61 237.3 139 89.9
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 9.3e-61 236.9 139 89.9
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.1e-59 231.1 140 88.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 7.4e-58 227.3 139 85.6
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.3e-57 226.5 140 86.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.6e-57 226.1 139 86.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.8e-57 225.3 140 84.3
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.8e-57 225.3 138 84.8
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.1e-56 223.4 140 85.0
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.4e-56 223.0 138 84.1
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.4e-56 223.0 138 84.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 84.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.0e-56 221.5 142 82.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 6.9e-56 220.7 140 83.6
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 82.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.5e-55 219.5 140 83.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 84.3
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 2.6e-55 218.8 139 82.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 3.4e-55 218.4 140 82.1
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 3.4e-55 218.4 138 81.2
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 7.6e-55 217.2 138 84.8
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 85.0
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 82.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 81.3
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 80.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 82.1
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.9e-54 214.5 139 79.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 4.9e-54 214.5 140 82.1
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 8.4e-54 213.8 137 79.6
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.4e-53 213.0 141 82.3
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 80.7
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 82.1
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.2e-53 211.8 140 82.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.1e-52 209.1 137 83.2
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.7e-52 208.8 137 82.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.7e-52 208.8 141 81.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.7e-52 208.8 140 80.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 3.5e-52 208.4 140 80.0
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 4.6e-52 208.0 140 79.3
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 6.0e-52 207.6 138 79.7
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 6.0e-52 207.6 141 80.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.0e-52 207.6 137 83.2
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 6.0e-52 207.6 142 80.3
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 6.0e-52 207.6 140 78.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.9e-52 207.2 140 80.7
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.0e-51 206.8 139 78.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.0e-51 206.8 139 78.4
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.8e-51 206.1 133 81.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-51 205.7 144 75.7
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 80.1
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.0e-51 205.3 138 81.2
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.9e-51 204.9 141 78.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 3.9e-51 204.9 140 80.7
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.9e-51 204.9 140 77.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 6.7e-51 204.1 139 77.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 6.7e-51 204.1 139 77.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 6.7e-51 204.1 139 77.0
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 6.7e-51 204.1 139 78.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.7e-51 204.1 139 79.1
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 139 77.0
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.5e-50 203.0 139 76.3
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 77.3
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.9e-50 202.6 141 75.9
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.9e-50 202.6 140 79.3
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 2.5e-50 202.2 137 78.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.3e-50 201.8 140 77.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.3e-50 201.8 140 77.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 4.3e-50 201.4 140 77.1
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 4.3e-50 201.4 139 77.0
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.3e-50 201.4 140 77.9
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.3e-50 201.4 141 80.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.3e-50 201.4 140 77.1
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 5.7e-50 201.1 134 82.1
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 5.7e-50 201.1 140 78.6
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 7.4e-50 200.7 140 77.1
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 7.4e-50 200.7 140 77.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 7.4e-50 200.7 140 77.1
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 9.7e-50 200.3 140 76.4
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 9.7e-50 200.3 138 78.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 76.3
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.7
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.7
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.0
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 144 73.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-49 199.5 143 72.0
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 76.4
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 138 76.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 75.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.8e-49 198.7 137 79.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.8e-49 198.0 140 74.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 4.8e-49 198.0 140 77.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 8.2e-49 197.2 139 75.5
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.2e-49 197.2 140 75.7
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 75.9
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 73.8
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.8e-48 196.1 139 75.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 3.1e-48 195.3 139 75.5
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.1e-48 195.3 139 73.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 3.1e-48 195.3 140 74.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 6.9e-48 194.1 140 78.6
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 140 75.0
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 138 77.5
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-47 193.0 140 75.0
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-47 193.0 140 75.0
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.0e-47 192.6 138 74.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.0e-47 192.6 139 77.7
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.6e-47 192.2 135 75.6
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.6e-47 192.2 140 78.6
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.6e-47 192.2 139 72.7
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 4.5e-47 191.4 139 74.8
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 75.0
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 7.7e-47 190.7 133 75.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 76.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.2e-46 189.1 140 76.4
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.2e-46 189.1 138 73.2
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 139 74.8
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 1.9e-45 186.0 131 74.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.2e-45 185.3 139 73.4
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.2e-45 185.3 156 67.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 9.4e-45 183.7 140 70.0
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 7.9e-44 180.6 140 69.3
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 7.9e-44 180.6 140 69.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.0e-43 178.7 136 69.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 5.1e-43 177.9 136 69.9
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.1e-42 176.8 138 67.4
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 2.2e-41 172.6 135 68.9
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.8e-41 172.2 136 68.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.1e-40 168.7 153 67.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 5.9e-39 164.5 103 80.6
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 5.9e-39 164.5 91 90.1
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.0e-38 163.7 139 64.7
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.5e-38 161.0 141 62.4
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 8.5e-38 160.6 140 66.4
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 9.4e-37 157.1 109 73.4
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.7e-36 155.6 114 70.2
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 4.7e-36 154.8 159 60.4
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 7.9e-36 154.1 116 67.2
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.9e-35 151.8 138 58.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.7e-33 146.4 147 59.2
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.4e-32 143.3 140 62.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.0e-32 141.0 137 57.7
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 7.7e-31 137.5 136 60.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.3e-30 136.7 89 78.7
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.7e-30 136.3 132 57.6
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 146 53.4
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-28 130.2 120 59.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.7e-28 129.0 90 82.2
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.7e-28 129.0 147 51.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.6e-28 128.6 137 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 6.1e-28 127.9 138 52.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 5.9e-23 111.3 106 59.4
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.0e-22 108.2 53 94.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.6e-20 103.2 143 42.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.8e-19 99.8 50 98.0
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 4.0e-19 98.6 67 67.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 4.1e-16 88.6 80 57.5
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.9e-15 84.7 73 69.9
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 7.7e-15 84.3 79 65.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.3e-06 57.0 32 90.6


User provided reference genes

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