Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 3.7e-70 268.1 136 100.0
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 7.3e-58 227.3 138 84.8
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.9e-53 212.6 138 79.0
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 6.0e-52 207.6 138 78.3
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 5.1e-51 204.5 138 78.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 9.6e-42 173.7 134 65.7
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 4.8e-41 171.4 131 62.6
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 9.9e-39 163.7 133 62.4
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 6.4e-38 161.0 135 68.9
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.9e-37 159.5 134 57.5
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 2.4e-37 159.1 142 57.0
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 3.2e-37 158.7 133 58.6
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 2.7e-36 155.6 133 57.9
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 2.7e-36 155.6 131 58.0
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 1.3e-35 153.3 134 53.0
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 1.8e-35 152.9 132 58.3
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 1.8e-35 152.9 160 53.1
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 3.9e-35 151.8 134 56.0
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 1.5e-34 149.8 136 56.6
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 3.3e-34 148.7 130 58.5
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 4.3e-34 148.3 134 56.0
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 7.4e-34 147.5 142 55.6
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 1.3e-33 146.7 134 54.5
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.3e-33 146.7 137 58.4
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 2.1e-33 146.0 136 52.9
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.8e-33 145.6 163 47.9
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 2.8e-33 145.6 133 59.4
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 3.7e-33 145.2 133 51.1
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 3.7e-33 145.2 148 54.1
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 3.7e-33 145.2 129 59.7
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 1.1e-32 143.7 136 54.4
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.4e-32 143.3 134 55.2
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 1.8e-32 142.9 133 50.4
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.8e-32 142.9 137 56.2
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 5.3e-32 141.4 145 53.1
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 6.9e-32 141.0 149 48.3
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 9.0e-32 140.6 136 52.9
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.2e-31 140.2 150 50.7
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.5e-31 139.8 132 53.0
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 2.6e-31 139.0 137 54.7
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 2.6e-31 139.0 136 50.7
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 8.4e-30 134.0 152 44.7
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 8.4e-30 134.0 152 45.4
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 8.4e-30 134.0 129 51.9
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.1e-29 133.7 141 49.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 1.4e-29 133.3 129 55.8
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.9e-29 132.9 146 50.7
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 2.5e-29 132.5 140 53.6
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 2.5e-29 132.5 140 52.9
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 7.1e-29 131.0 135 52.6
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 7.1e-29 131.0 166 47.0
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 6.0e-28 127.9 169 42.6
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 1.3e-27 126.7 129 52.7
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.8e-27 126.3 157 46.5
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 5.1e-27 124.8 163 40.5
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 5.1e-27 124.8 162 44.4
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 6.7e-27 124.4 153 46.4
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 6.7e-27 124.4 168 40.5
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 6.7e-27 124.4 131 48.1
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 8.7e-27 124.0 153 45.8
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 1.1e-26 123.6 140 49.3
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.1e-26 123.6 149 46.3
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.5e-26 123.2 153 47.1
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 1.9e-26 122.9 129 47.3
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.6e-25 119.8 155 42.6
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.6e-25 119.8 171 40.9
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 6.3e-25 117.9 104 68.3
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 8.2e-25 117.5 164 40.9
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.4e-24 115.9 164 40.2
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 9.0e-24 114.0 163 41.7
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 2.0e-23 112.8 151 45.0
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 3.4e-23 112.1 166 39.2
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 3.4e-23 112.1 130 45.4
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 5.9e-23 111.3 150 42.7
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 5.9e-23 111.3 186 40.3
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 3.8e-22 108.6 134 47.0
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 6.5e-22 107.8 137 44.5
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 8.5e-22 107.5 134 47.0
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.6e-20 103.2 167 40.7
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 2.7e-20 102.4 164 40.2
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 3.6e-20 102.1 136 42.6
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 6.7e-19 97.8 134 44.8
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 6.7e-19 97.8 132 40.9
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 1.9e-18 96.3 164 39.0
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.5e-18 95.9 188 34.0
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 2.5e-18 95.9 90 51.1
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 2.5e-18 95.9 90 51.1
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 2.8e-17 92.4 197 35.5
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 6.3e-17 91.3 163 36.2
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 1.4e-16 90.1 106 49.1
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 1.4e-16 90.1 135 40.0
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 6.9e-16 87.8 197 34.0
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 1.5e-15 86.7 129 42.6
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.0e-15 86.3 141 35.5
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 2.0e-15 86.3 114 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 2.6e-15 85.9 111 46.8
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 3.4e-15 85.5 52 75.0
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 4.5e-15 85.1 84 54.8
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 1.4e-13 80.1 110 45.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 5.5e-13 78.2 141 36.2
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 3.6e-12 75.5 162 31.5
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 3.6e-12 75.5 194 30.9
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.8e-11 73.2 123 40.7
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 8.8e-11 70.9 92 42.4
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 2.0e-10 69.7 96 40.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 1.3e-09 67.0 97 42.3
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.3e-09 67.0 69 55.1
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 2.2e-09 66.2 53 62.3
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 2.2e-09 66.2 128 32.0
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 2.8e-09 65.9 52 65.4
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.2e-09 64.3 87 48.3
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 8.2e-09 64.3 93 39.8
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.1e-08 60.8 87 47.1
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.1e-08 60.8 87 47.1
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 9.1e-08 60.8 87 47.1
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 2.2e-06 56.2 52 57.7


User provided reference genes

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