Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G921.14 Capsicum annuum HOM05D004731 ORTHO05D005577 1.9e-234 815.5 401 100.0
PGSC0003DMG400025487 Solanum tuberosum HOM05D004731 ORTHO05D005577 4.6e-177 624.8 319 93.1
Sopen07g026110 Solanum pennellii HOM05D004731 ORTHO05D005577 7.9e-177 624.0 319 92.8
Peaxi162Scf00007g01115 Petunia axillaris HOM05D004731 ORTHO05D005577 1.0e-176 623.6 319 93.4
Nitab4.5_0001176g0080 Nicotiana tabacum HOM05D004731 ORTHO05D005577 8.8e-176 620.5 319 92.5
Nitab4.5_0010201g0030 Nicotiana tabacum HOM05D004731 ORTHO05D005577 8.8e-176 620.5 319 92.2
Nitab4.5_0003509g0010 Nicotiana tabacum HOM05D004731 ORTHO05D005577 5.0e-163 578.2 319 85.0
CSS0044333 Camellia sinensis var. sinensis HOM05D004731 ORTHO05D005577 7.2e-162 574.3 319 85.0
HanXRQChr04g0110581 Helianthus annuus HOM05D004731 ORTHO05D005577 1.6e-161 573.2 319 84.3
CSS0029719 Camellia sinensis var. sinensis HOM05D004731 ORTHO05D005577 2.1e-161 572.8 319 84.6
Eucgr.K00802 Eucalyptus grandis HOM05D004731 ORTHO05D005577 8.0e-161 570.9 319 83.7
PSO675G8406 Papaver somniferum HOM05D004731 ORTHO05D005577 1.4e-160 570.1 320 84.1
MD09G1106500 Malus domestica HOM05D004731 ORTHO05D005577 1.8e-160 569.7 319 82.1
PSO541G0248 Papaver somniferum HOM05D004731 ORTHO05D005577 2.3e-160 569.3 320 83.8
Oeu011087.1 Olea europaea HOM05D004731 ORTHO05D005577 5.2e-160 568.2 320 84.7
Thecc.02G312600 Theobroma cacao HOM05D004731 ORTHO05D005577 5.2e-160 568.2 320 82.2
Cpa.g.sc8.225 Carica papaya HOM05D004731 ORTHO05D005577 1.1e-159 567.0 319 82.8
Lsat_1_v5_gn_8_128420 Lactuca sativa HOM05D004731 ORTHO05D005577 1.1e-159 567.0 318 83.6
DCAR_012950 Daucus carota HOM05D004731 ORTHO05D005577 2.0e-159 566.2 318 83.3
Gorai.013G099800 Gossypium raimondii HOM05D004731 ORTHO05D005577 2.0e-159 566.2 320 82.5
Aqoxy4G01979 Aquilegia oxysepala HOM05D004731 ORTHO05D005577 2.6e-159 565.8 319 81.5
Gohir.A13G093600 Gossypium hirsutum HOM05D004731 ORTHO05D005577 2.6e-159 565.8 320 82.5
Ciclev10014655m.g Citrus clementina HOM05D004731 ORTHO05D005577 3.3e-159 565.5 319 81.2
Prupe.3G219100 Prunus persica HOM05D004731 ORTHO05D005577 5.7e-159 564.7 319 81.5
ECA233G0706 Erigeron canadensis HOM05D004731 ORTHO05D005577 2.2e-158 562.8 319 83.1
Migut.M00410 Erythranthe guttata HOM05D004731 ORTHO05D005577 2.2e-158 562.8 320 82.5
Cfa014429 Carpinus fangiana HOM05D004731 ORTHO05D005577 6.3e-158 561.2 320 81.6
Manes.12G076000 Manihot esculenta HOM05D004731 ORTHO05D005577 2.4e-157 559.3 320 80.9
Actinidia09705 Actinidia chinensis HOM05D004731 ORTHO05D005577 5.3e-157 558.1 320 82.8
Potri.007G122900 Populus trichocarpa HOM05D004731 ORTHO05D005577 5.3e-157 558.1 320 81.2
CiPaw.03G162000 Carya illinoinensis HOM05D004731 ORTHO05D005577 7.0e-157 557.8 319 80.3
Rhsim06G0159200 Rhododendron simsii HOM05D004731 ORTHO05D005577 7.0e-157 557.8 345 77.7
FvH4_6g43440 Fragaria vesca HOM05D004731 ORTHO05D005577 1.2e-156 557.0 319 79.0
RcHm_v2.0_Chr2g0159821 Rosa chinensis HOM05D004731 ORTHO05D005577 1.6e-156 556.6 319 79.6
Nn1g07047 Nelumbo nucifera HOM05D004731 ORTHO05D005577 5.9e-156 554.7 320 81.2
Gohir.A03G109600 Gossypium hirsutum HOM05D004731 ORTHO05D005577 7.7e-156 554.3 320 81.6
TWI36G0780 Tripterygium wilfordii HOM05D004731 ORTHO05D005577 1.0e-155 553.9 320 82.2
Lj1P757T15 Lonicera japonica HOM05D004731 ORTHO05D005577 1.3e-155 553.5 320 81.2
QL08p033580 Quercus lobata HOM05D004731 ORTHO05D005577 1.3e-155 553.5 318 79.9
vmacro12222 Vaccinium macrocarpon HOM05D004731 ORTHO05D005577 2.2e-155 552.7 319 81.8
Hund24408 Selenicereus undatus HOM05D004731 ORTHO05D005577 1.1e-154 550.4 321 80.1
Atru.chr6.3161 Acer truncatum HOM05D004731 ORTHO05D005577 2.5e-154 549.3 319 79.3
PGR142G3606 Punica granatum HOM05D004731 ORTHO05D005577 4.2e-154 548.5 320 80.6
DCAR_021183 Daucus carota HOM05D004731 ORTHO05D005577 2.1e-153 546.2 319 79.6
Gohir.D02G134400 Gossypium hirsutum HOM05D004731 ORTHO05D005577 3.6e-153 545.4 320 80.0
Gorai.005G150300 Gossypium raimondii HOM05D004731 ORTHO05D005577 3.6e-153 545.4 320 79.7
Potri.017G036900 Populus trichocarpa HOM05D004731 ORTHO05D005577 3.6e-153 545.4 320 79.7
FAN05G5305 Fragaria x ananassa HOM05D004731 ORTHO05D005577 8.0e-153 544.3 340 73.5
QL08p033547 Quercus lobata HOM05D004731 ORTHO05D005577 8.0e-153 544.3 318 78.6
Sed0023583 Sechium edule HOM05D004731 ORTHO05D005577 8.0e-153 544.3 320 78.4
CsaV3_2G035120 Cucumis sativus L. HOM05D004731 ORTHO05D005577 1.0e-152 543.9 320 79.7
DCAR_019287 Daucus carota HOM05D004731 ORTHO05D005577 1.4e-152 543.5 319 80.3
TAR624G1207 Trochodendron aralioides HOM05D004731 ORTHO05D005577 3.0e-152 542.3 320 80.9
ClCG02G008490 Citrullus lanatus HOM05D004731 ORTHO05D005577 5.2e-152 541.6 327 78.3
AUR62028388 Chenopodium quinoa HOM05D004731 ORTHO05D005577 1.5e-151 540.0 321 77.6
TWI75G0012 Tripterygium wilfordii HOM05D004731 ORTHO05D005577 5.7e-151 538.1 320 80.9
Manes.13G072200 Manihot esculenta HOM05D004731 ORTHO05D005577 9.8e-151 537.3 320 78.4
CANSAT64G0826 Cannabis sativa HOM05D004731 ORTHO05D005577 2.2e-150 536.2 319 78.1
FAN02G3012 Fragaria x ananassa HOM05D004731 ORTHO05D005577 8.3e-150 534.3 366 68.3
FAN09G0477 Fragaria x ananassa HOM05D004731 ORTHO05D005577 1.4e-149 533.5 367 69.2
BraA03t13397Z Brassica rapa HOM05D004731 ORTHO05D005577 1.8e-149 533.1 320 76.9
SalBow7G1245 Salvia bowleyana HOM05D004731 ORTHO05D005577 2.4e-149 532.7 288 86.8
A03p42440 Brassica napus HOM05D004731 ORTHO05D005577 9.1e-149 530.8 320 76.6
BcaB06g26278 Brassica carinata HOM05D004731 ORTHO05D005577 1.2e-148 530.4 320 76.6
BcaC05g28137 Brassica carinata HOM05D004731 ORTHO05D005577 1.2e-148 530.4 320 76.6
A05p27010 Brassica napus HOM05D004731 ORTHO05D005577 1.2e-148 530.4 320 76.6
AUR62039771 Chenopodium quinoa HOM05D004731 ORTHO05D005577 1.6e-148 530.0 321 76.3
Aa31LG8G8350 Aethionema arabicum HOM05D004731 ORTHO05D005577 2.0e-148 529.6 320 75.6
BraA05t21584Z Brassica rapa HOM05D004731 ORTHO05D005577 2.7e-148 529.3 320 76.2
C03p51920 Brassica napus HOM05D004731 ORTHO05D005577 3.5e-148 528.9 320 76.2
C05p41690 Brassica napus HOM05D004731 ORTHO05D005577 4.5e-148 528.5 320 76.2
BolC5t32904H Brassica oleracea HOM05D004731 ORTHO05D005577 4.5e-148 528.5 320 76.2
THA.LOC104808494 Tarenaya hassleriana HOM05D004731 ORTHO05D005577 7.7e-148 527.7 321 77.6
Thhalv10022122m.g Eutrema salsugineum HOM05D004731 ORTHO05D005577 1.3e-147 526.9 320 75.6
Lalb_Chr19g0135731 Lupinus albus HOM05D004731 ORTHO05D005577 2.2e-147 526.2 319 76.5
BcaB04g20569 Brassica carinata HOM05D004731 ORTHO05D005577 2.9e-147 525.8 319 75.5
BcaC01g03487 Brassica carinata HOM05D004731 ORTHO05D005577 2.9e-147 525.8 320 75.9
BolC3t17478H Brassica oleracea HOM05D004731 ORTHO05D005577 2.9e-147 525.8 320 75.9
BcaB04g20567 Brassica carinata HOM05D004731 ORTHO05D005577 5.0e-147 525.0 320 75.3
FAN14G3935 Fragaria x ananassa HOM05D004731 ORTHO05D005577 6.5e-147 524.6 388 65.2
Sp3g19730 Schrenkiella parvula HOM05D004731 ORTHO05D005577 1.1e-146 523.9 320 75.3
Glyma.12G100500 Glycine max HOM05D004731 ORTHO05D005577 1.5e-146 523.5 319 74.3
Phvul.011G105500 Phaseolus vulgaris HOM05D004731 ORTHO05D005577 9.4e-146 520.8 319 74.0
Phvul.011G106801 Phaseolus vulgaris HOM05D004731 ORTHO05D005577 9.4e-146 520.8 319 74.0
Carub.0003s2177 Capsella rubella HOM05D004731 ORTHO05D005577 1.6e-145 520.0 320 74.4
CARHR097670 Cardamine hirsuta HOM05D004731 ORTHO05D005577 4.7e-145 518.5 320 75.3
MBI02_g10107_MAGBIO Magnolia biondii HOM05D004731 ORTHO05D005577 8.0e-145 517.7 319 77.4
AL3G35840 Arabidopsis lyrata HOM05D004731 ORTHO05D005577 1.0e-144 517.3 320 74.1
arahy.Tifrunner.gnm1.ann1.TKPZ56 Arachis hypogaea HOM05D004731 ORTHO05D005577 1.8e-144 516.5 319 74.0
Glyma.06G303200 Glycine max HOM05D004731 ORTHO05D005577 3.0e-144 515.8 320 73.8
EL10Ac8g18891 Beta vulgaris HOM05D004731 ORTHO05D005577 4.0e-144 515.4 321 74.8
Nn1g03615 Nelumbo nucifera HOM05D004731 ORTHO05D005577 4.0e-144 515.4 320 75.6
arahy.Tifrunner.gnm1.ann1.X0NGMJ Arachis hypogaea HOM05D004731 ORTHO05D005577 8.8e-144 514.2 319 73.7
AT3G21720 Arabidopsis thaliana HOM05D004731 ORTHO05D005577 3.4e-143 512.3 320 73.4
VMungo1127G2299 Vigna mungo HOM05D004731 ORTHO05D005577 6.3e-142 508.1 319 72.4
ATR0697G164 Amborella trichopoda HOM05D004731 ORTHO05D005577 1.1e-141 507.3 302 77.8
Lj3g0018668 Lotus japonicus HOM05D004731 ORTHO05D005577 7.0e-141 504.6 319 73.0
Psat7g179960 Pisum sativum HOM05D004731 ORTHO05D005577 2.7e-140 502.7 321 73.2
Medtr4g046757 Medicago truncatula HOM05D004731 ORTHO05D005577 5.9e-140 501.5 321 72.6
MELO3C019243.2 Cucumis melo HOM05D004731 ORTHO05D005577 2.9e-139 499.2 288 80.2
ATR0697G058 Amborella trichopoda HOM05D004731 ORTHO05D005577 6.6e-139 498.0 302 77.2
MD17G1094300 Malus domestica HOM05D004731 ORTHO05D005577 3.3e-138 495.7 274 82.8
Cc05_g04940 Coffea canephora HOM05D004731 ORTHO05D005577 1.2e-137 493.8 320 75.0
ATR0697G137 Amborella trichopoda HOM05D004731 ORTHO05D005577 1.8e-136 490.0 288 79.2
Sabra07G0099600 Salix brachista HOM05D004731 ORTHO05D005577 1.8e-136 490.0 320 73.8
Ah.09g228590 Amaranthus hybridus HOM05D004731 ORTHO05D005577 2.6e-135 486.1 322 71.7
Haze_12887 Corylus avellana HOM05D004731 ORTHO05D005577 2.6e-135 486.1 330 71.5
Ca_27733_v3 Cicer arietinum L. HOM05D004731 ORTHO05D005577 4.4e-135 485.3 330 69.7
HPP92_012326 Vanilla planifolia HOM05D004731 ORTHO05D005577 8.3e-134 481.1 320 69.7
Os07g0529000 Oryza sativa ssp. japonica HOM05D004731 ORTHO05D005577 5.9e-132 474.9 319 70.8
SEGI_22707 Sequoiadendron giganteum HOM05D004731 ORTHO05D005577 3.0e-131 472.6 319 69.3
SGA_v2.0_scaffold34G13870 Striga asiatica HOM05D004731 ORTHO05D005577 1.2e-129 467.2 289 76.8
Zm00001eb323090 Zea mays HOM05D004731 ORTHO05D005577 1.2e-127 460.7 320 69.1
SEGI_12486 Sequoiadendron giganteum HOM05D004731 ORTHO05D005577 4.1e-125 452.2 321 65.4
unitig_899.g15245 Utricularia gibba HOM05D004731 ORTHO05D005577 6.8e-120 434.9 254 78.0
Gohir.D13G087500 Gossypium hirsutum HOM05D004731 ORTHO05D005577 3.4e-119 432.6 237 83.1
SMO196G0149 Selaginella moellendorffii HOM05D004731 ORTHO05D005577 6.0e-116 421.8 319 63.3
Lalb_Chr03g0028811 Lupinus albus HOM05D004731 ORTHO05D005577 4.7e-113 412.1 258 72.9
AagrBONN_evm.TU.Sc2ySwM_344.2376 Anthoceros agrestis HOM05D004731 ORTHO05D005577 1.8e-112 410.2 297 62.6
GSVIVG01030608001 Vitis vinifera HOM05D004731 ORTHO05D005577 1.1e-106 391.0 218 83.9
CBR_g8290 Chara braunii HOM05D004731 ORTHO05D005577 7.3e-106 388.3 316 58.5
CDE05G2280 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 5.2e-104 382.1 222 78.4
CDE11G0460 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 1.6e-100 370.5 234 76.5
Mapoly0023s0108 Marchantia polymorpha HOM05D004731 ORTHO05D005577 6.6e-99 365.2 295 58.0
Pp3c7_2440 Physcomitrium patens HOM05D004731 ORTHO05D005577 3.3e-98 362.8 320 55.9
Pp3c7_2470 Physcomitrium patens HOM05D004731 ORTHO05D005577 3.3e-98 362.8 320 55.9
Mapoly0115s0061 Marchantia polymorpha HOM05D004731 ORTHO05D005577 2.6e-95 353.2 296 55.4
Dinv39693 Davidia involucrata HOM05D004731 ORTHO05D005577 9.3e-77 291.6 177 77.4
Cfa025720 Carpinus fangiana HOM05D004731 ORTHO05D005577 9.6e-74 281.6 296 50.7
Dinv02740 Davidia involucrata HOM05D004731 ORTHO05D005577 3.1e-72 276.6 186 72.6
COL.COLO4_27682 Corchorus olitorius HOM05D004731 ORTHO05D005577 6.9e-72 275.4 187 71.7
Peaxi162Scf00932g00022 Petunia axillaris HOM05D004731 ORTHO05D005577 8.5e-70 268.5 288 52.4
Cfa027059 Carpinus fangiana HOM05D004731 ORTHO05D005577 9.1e-56 221.9 294 38.1
Sc06g0009530 Simmondsia chinensis HOM05D004731 ORTHO05D005577 6.3e-41 172.6 109 70.6
BcaB04g20566 Brassica carinata HOM05D004731 ORTHO05D005577 1.1e-37 161.8 122 59.0
Cre06.g282800 Chlamydomonas reinhardtii HOM05D004731 ORTHO05D005577 4.0e-35 153.3 177 44.6
Haze_27171 Corylus avellana HOM05D004731 ORTHO05D005577 6.3e-33 146.0 185 41.1
Dinv02741 Davidia involucrata HOM05D004731 ORTHO05D005577 8.0e-28 129.0 82 73.2
HPP92_012390 Vanilla planifolia HOM05D004731 ORTHO05D005577 1.0e-27 128.6 83 74.7
BcaB04g20563 Brassica carinata HOM05D004731 ORTHO05D005577 5.7e-26 122.9 87 63.2
HPP92_012388 Vanilla planifolia HOM05D004731 ORTHO05D005577 9.5e-21 105.5 79 65.8
CDE11G1033 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 1.4e-19 101.7 60 76.7
CDE05G2484 Ceratophyllum demersum HOM05D004731 ORTHO05D005577 6.8e-19 99.4 82 67.1
HPP92_012389 Vanilla planifolia HOM05D004731 ORTHO05D005577 5.0e-14 83.2 58 60.3
TPR.G275 Trifolium pratense HOM05D004731 ORTHO05D005577 4.0e-11 73.6 53 66.0
BcaB04g20565 Brassica carinata HOM05D004731 ORTHO05D005577 9.8e-10 68.9 42 69.0


User provided reference genes

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