Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 3.5e-108 395.2 235 100.0
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.9e-46 189.5 166 71.1
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.0e-43 179.5 162 71.6
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.9e-38 162.9 162 71.6
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 5.7e-26 122.1 174 56.9
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 3.1e-24 116.3 168 49.4
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 3.5e-23 112.8 138 65.2
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 4.5e-23 112.5 177 42.4
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.3e-22 110.2 172 47.7
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.8e-19 100.5 165 48.5
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.0e-19 99.8 203 39.4
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 1.3e-17 94.4 190 36.3
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 3.7e-17 92.8 142 51.4
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.4e-16 90.9 68 69.1
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.4e-16 90.1 168 46.4
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 3.2e-16 89.7 64 68.8
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.1e-16 89.4 169 45.0
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 7.0e-16 88.6 163 42.9
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-15 86.7 73 67.1
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-15 86.7 73 67.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 4.6e-15 85.9 70 67.1
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 7.8e-15 85.1 170 47.1
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.3e-14 84.3 158 47.5
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.7e-14 84.0 89 59.6
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.3e-14 83.6 153 51.0
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 6.6e-14 82.0 147 43.5
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.6e-14 82.0 154 45.5
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 6.6e-14 82.0 75 58.7
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.1e-13 81.3 167 44.3
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.9e-13 80.5 72 61.1
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.5e-13 80.1 145 46.9
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.5e-13 80.1 154 45.5
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 3.3e-13 79.7 154 45.5
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 4.3e-13 79.3 56 71.4
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 4.3e-13 79.3 165 34.5
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 4.3e-13 79.3 101 59.4
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 7.3e-13 78.6 58 69.0
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 7.3e-13 78.6 167 49.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 7.3e-13 78.6 155 47.1
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 9.5e-13 78.2 163 41.1
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.6e-12 77.4 68 60.3
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 1.6e-12 77.4 72 59.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.1e-12 77.0 59 64.4
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.7e-12 75.9 168 42.9
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 6.2e-12 75.5 66 60.6
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 6.2e-12 75.5 63 63.5
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 8.0e-12 75.1 97 58.8
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.0e-11 74.7 81 53.1
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 1.0e-11 74.7 167 36.5
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-11 74.7 106 50.9
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.0e-11 74.7 55 69.1
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.0e-11 74.7 104 47.1
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.4e-11 74.3 66 53.0
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.8e-11 73.9 72 54.2
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 1.8e-11 73.9 68 58.8
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.8e-11 73.9 155 45.2
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.3e-11 73.6 170 49.4
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.3e-11 73.6 67 62.7
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 2.3e-11 73.6 70 55.7
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 3.1e-11 73.2 67 58.2
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.1e-11 73.2 55 69.1
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.1e-11 73.2 55 69.1
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.0e-11 72.8 71 56.3
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 4.0e-11 72.8 70 52.9
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 5.2e-11 72.4 147 40.1
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 5.2e-11 72.4 147 40.1
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 5.2e-11 72.4 147 40.1
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 6.8e-11 72.0 67 58.2
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 6.8e-11 72.0 64 51.6
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 6.8e-11 72.0 159 40.9
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.8e-11 72.0 115 42.6
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 6.8e-11 72.0 50 70.0
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.2e-10 71.2 51 68.6
Nitab4.5_0007218g0010 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.2e-10 71.2 156 51.9
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.2e-10 71.2 159 42.8
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.5e-10 70.9 68 52.9
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.5e-10 70.9 68 52.9
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.5e-10 70.9 172 39.5
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 2.0e-10 70.5 71 54.9
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.0e-10 70.5 51 68.6
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.0e-10 70.5 52 67.3
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.6e-10 70.1 71 52.1
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.6e-10 70.1 60 61.7
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 3.4e-10 69.7 164 35.4
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 4.4e-10 69.3 166 34.9
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.4e-10 69.3 167 49.1
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 9.8e-10 68.2 102 49.0
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 1.7e-09 67.4 60 55.0
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.2e-09 67.0 165 49.1
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.2e-09 67.0 116 49.1
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 4.9e-09 65.9 56 57.1
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 4.9e-09 65.9 70 58.6
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 6.4e-09 65.5 100 45.0
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 8.3e-09 65.1 45 68.9
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.1e-08 64.7 70 55.7
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.1e-08 64.7 75 52.0
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.4e-08 64.3 70 52.9
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.9e-08 63.9 145 46.2
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 2.4e-08 63.5 71 52.1
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 4.1e-08 62.8 71 50.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 4.1e-08 62.8 71 50.7
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 4.1e-08 62.8 70 52.9
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 7.0e-08 62.0 169 36.1
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 9.2e-08 61.6 71 46.5
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 9.2e-08 61.6 95 37.9
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 1.2e-07 61.2 66 51.5
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.6e-07 60.8 49 61.2
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 1.6e-07 60.8 66 45.5
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 1.6e-07 60.8 86 39.5
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 2.0e-07 60.5 67 49.3
Nn2g13093 Nelumbo nucifera HOM05D004188 ORTHO05D004445 3.5e-07 59.7 172 32.6
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 3.5e-07 59.7 165 43.0
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 4.6e-07 59.3 181 34.3
Nitab4.5_0000181g0100 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.6e-07 59.3 158 50.0
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.3e-06 57.8 59 49.2
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 1.7e-06 57.4 100 43.0
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.7e-06 57.4 109 45.9
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 1.7e-06 57.4 163 35.6
Hma1.2p1_0058F.1_g032570 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.7e-06 57.4 35 77.1
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 2.3e-06 57.0 63 44.4
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 3.0e-06 56.6 109 43.1
MSTRG.17805 Avicennia marina HOM05D004188 ORTHO05D004445 3.9e-06 56.2 36 72.2
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 3.9e-06 56.2 50 62.0
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 3.9e-06 56.2 127 41.7
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 3.9e-06 56.2 157 35.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 5.0e-06 55.8 67 41.8
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 6.6e-06 55.5 57 50.9
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 6.6e-06 55.5 184 35.3
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 8.6e-06 55.1 46 52.2


User provided reference genes

Program Settings