Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 2.2e-45 185.3 92 100.0
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.0e-34 147.5 88 85.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 9.7e-30 133.3 88 75.0
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.8e-29 131.7 88 73.9
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 2.8e-29 131.7 88 73.9
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.1e-28 128.3 88 71.6
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.7e-26 122.5 87 70.1
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.8e-26 121.3 88 67.0
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.8e-26 121.3 88 67.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.1e-25 119.8 88 68.2
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.1e-25 119.8 88 69.3
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.1e-25 119.8 88 67.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.5e-25 119.4 89 67.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.5e-25 118.6 88 64.8
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 3.2e-25 118.2 87 64.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 5.5e-25 117.5 87 66.7
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 5.5e-25 117.5 87 66.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.5e-25 117.5 87 65.5
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.5e-25 117.5 87 65.5
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.5e-25 117.5 87 65.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.2e-25 117.1 87 67.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 7.2e-25 117.1 87 65.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 9.4e-25 116.7 87 66.7
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.2e-24 116.3 87 65.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.6e-24 115.9 87 64.4
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.6e-24 115.9 87 64.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.6e-24 115.9 87 64.4
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.1e-24 115.5 87 64.4
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.1e-24 115.5 87 64.4
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.7e-24 115.2 87 65.5
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.6e-24 114.8 87 66.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.7e-24 114.4 87 64.4
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 6.1e-24 114.0 87 63.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.0e-24 113.6 87 63.2
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.0e-23 113.2 87 62.1
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.0e-23 113.2 88 64.8
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.4e-23 112.8 88 62.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-23 112.8 88 62.5
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-23 112.8 88 62.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-23 112.5 87 66.7
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.8e-23 112.5 87 66.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.8e-23 112.5 87 60.9
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.3e-23 112.1 87 60.9
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.3e-23 112.1 87 63.2
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.3e-23 112.1 88 61.4
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.3e-23 112.1 87 65.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.3e-23 112.1 87 63.2
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.0e-23 111.7 87 63.2
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.0e-23 111.7 118 52.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 3.0e-23 111.7 87 59.8
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 4.0e-23 111.3 87 60.9
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 4.0e-23 111.3 87 60.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 6.8e-23 110.5 87 64.4
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 6.8e-23 110.5 87 60.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 59.8
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 59.8
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 59.8
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 59.8
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 59.8
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 64.4
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 63.2
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 8.8e-23 110.2 87 60.9
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-22 109.8 89 61.8
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.2e-22 109.8 87 62.1
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.2e-22 109.8 88 61.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.2e-22 109.8 87 62.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.2e-22 109.8 87 62.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-22 109.4 87 60.9
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.5e-22 109.4 87 60.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.5e-22 109.4 87 64.4
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.5e-22 109.4 87 64.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.5e-22 109.4 86 61.6
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.5e-22 109.4 89 61.8
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-22 109.4 88 61.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.5e-22 109.4 88 62.5
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-22 109.0 88 61.4
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 2.0e-22 109.0 87 60.9
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.6e-22 108.6 89 60.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.6e-22 108.6 87 62.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-22 108.6 88 61.4
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.4e-22 108.2 86 60.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 3.4e-22 108.2 87 60.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.4e-22 107.8 86 59.3
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.7e-22 107.5 86 59.3
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.7e-22 107.5 86 59.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 5.7e-22 107.5 86 59.3
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 7.5e-22 107.1 87 59.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 9.8e-22 106.7 87 60.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.3e-21 106.3 87 60.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.7e-21 105.9 87 59.8
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.7e-21 105.9 86 58.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.7e-21 105.9 87 62.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.2e-21 105.5 88 60.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.2e-21 105.5 89 59.6
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.8e-21 104.4 87 60.9
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 6.3e-21 104.0 87 58.6
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 6.3e-21 104.0 86 61.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.1e-20 103.2 88 60.2
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.4e-20 102.8 87 60.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 4.1e-20 101.3 87 60.9
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.1e-20 101.3 87 59.8
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.4e-20 100.9 87 57.5
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.2e-19 99.8 87 59.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.6e-19 99.4 87 57.5
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.6e-19 99.4 88 56.8
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.7e-19 98.6 65 75.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.5e-19 98.2 86 57.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.5e-19 98.2 87 59.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 4.5e-19 97.8 87 58.6
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.5e-19 97.8 87 58.6
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 5.9e-19 97.4 86 58.1
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 5.0e-18 94.4 87 55.2
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.5e-18 93.6 70 67.1
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.5e-18 93.6 89 55.1
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 8.5e-18 93.6 95 53.7
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.1e-17 93.2 96 55.2
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.9e-17 92.4 88 54.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.1e-16 89.0 122 42.6
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-15 86.3 88 53.4
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.3e-15 85.5 64 57.8
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 2.3e-15 85.5 80 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.0e-15 85.1 92 52.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.4e-14 81.6 92 48.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 3.4e-14 81.6 80 52.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 4.4e-14 81.3 63 61.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.8e-14 80.1 56 67.9
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.4e-12 74.3 53 69.8
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 9.2e-12 73.6 80 47.5
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.5e-06 53.9 82 40.2


User provided reference genes

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