Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 2.1e-54 215.3 98 100.0
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 4.8e-19 97.8 46 89.1
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 4.8e-19 97.8 46 89.1
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 4.8e-19 97.8 46 89.1
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 4.8e-19 97.8 46 89.1
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 1.4e-18 96.3 46 87.0
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 1.4e-18 96.3 46 87.0
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 3.1e-18 95.1 46 87.0
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 3.1e-18 95.1 46 87.0
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 4.1e-18 94.7 46 84.8
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 5.3e-18 94.4 46 87.0
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 7.0e-18 94.0 43 93.0
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 3.5e-17 91.7 46 84.8
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 4.5e-17 91.3 50 78.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.0e-16 90.1 46 82.6
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 5.0e-16 87.8 46 80.4
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.5e-16 87.4 46 78.3
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 6.5e-16 87.4 43 86.0
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 8.0e-14 80.5 39 89.7
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 8.0e-14 80.5 46 76.1
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.0e-13 80.1 44 79.5
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.4e-13 79.7 46 71.7
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 3.0e-13 78.6 35 94.3
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.6e-12 75.5 43 79.1
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 4.4e-12 74.7 39 84.6
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 4.4e-12 74.7 43 74.4
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 4.4e-12 74.7 40 80.0
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 1.3e-11 73.2 35 82.9
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-10 69.3 61 55.7
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 2.4e-10 68.9 41 78.0
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 2.0e-09 65.9 41 70.7
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.0e-09 65.9 34 82.4
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 2.9e-08 62.0 46 60.9
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-07 59.3 46 58.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-07 59.3 46 58.7
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-07 59.3 46 58.7
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 2.5e-07 58.9 46 58.7
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 4.2e-07 58.2 46 58.7
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 5.5e-07 57.8 26 92.3
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 5.5e-07 57.8 46 58.7
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 7.2e-07 57.4 46 56.5
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 7.2e-07 57.4 46 56.5
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 7.2e-07 57.4 49 51.0
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.6e-06 56.2 46 56.5
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.6e-06 56.2 46 56.5
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.6e-06 56.2 46 56.5
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 1.6e-06 56.2 46 56.5
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.6e-06 56.2 46 56.5
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.1e-06 55.8 44 59.1
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 2.1e-06 55.8 42 64.3
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 2.7e-06 55.5 44 59.1
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 2.7e-06 55.5 44 56.8
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.6e-06 55.1 46 54.3
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 4.7e-06 54.7 46 54.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.1e-06 54.3 46 54.3
Aa31LG10G9900 Aethionema arabicum HOM05D000002 ORTHO05D000001 8.0e-06 53.9 31 74.2
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 8.0e-06 53.9 24 91.7
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 8.0e-06 53.9 24 91.7


User provided reference genes

Program Settings