Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.2e-50 203.0 109 100.0
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 4.5e-26 121.3 250 36.0
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.8e-14 82.8 182 33.5
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.3e-14 82.4 182 33.5
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 4.0e-14 81.6 185 33.0
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.5e-13 79.7 50 82.0
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.0e-13 79.3 182 33.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.9e-12 74.7 162 31.5
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 8.3e-12 73.9 181 30.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 8.3e-12 73.9 181 30.9
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-11 73.6 40 90.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 1.4e-11 73.2 48 70.8
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.9e-11 72.8 181 30.4
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 3.2e-11 72.0 182 30.2
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.2e-10 70.1 182 30.2
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.7e-10 68.9 178 29.8
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.5e-10 68.6 38 81.6
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.5e-10 68.6 38 81.6
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 3.5e-10 68.6 38 84.2
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 7.8e-10 67.4 182 28.6
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.0e-09 67.0 61 54.1
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.0e-09 67.0 37 81.1
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.0e-09 67.0 35 85.7
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.3e-09 66.6 38 78.9
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.3e-09 66.6 68 54.4
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 3.0e-09 65.5 40 77.5
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.0e-09 65.5 38 76.3
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.0e-09 65.5 38 78.9
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 3.0e-09 65.5 37 81.1
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.9e-09 65.1 40 75.0
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.9e-09 65.1 46 65.2
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 3.9e-09 65.1 38 76.3
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 3.9e-09 65.1 66 54.5
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 5.0e-09 64.7 38 76.3
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 5.0e-09 64.7 43 65.1
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 8.6e-09 63.9 69 49.3
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 8.6e-09 63.9 38 73.7
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.1e-08 63.5 38 73.7
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.1e-08 63.5 40 75.0
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.5e-08 63.2 38 73.7
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.5e-08 63.2 38 73.7
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.5e-08 63.2 38 76.3
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.9e-08 62.8 40 70.0
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 2.5e-08 62.4 182 26.9
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 3.3e-08 62.0 158 29.1
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.3e-08 62.0 38 71.1
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 4.3e-08 61.6 38 76.3
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 4.3e-08 61.6 40 70.0
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 4.3e-08 61.6 38 73.7
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.3e-08 61.6 38 71.1
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 5.6e-08 61.2 35 77.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 7.3e-08 60.8 32 81.2
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 7.3e-08 60.8 38 71.1
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 7.3e-08 60.8 38 76.3
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 9.5e-08 60.5 32 81.2
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 9.5e-08 60.5 35 77.1
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.2e-07 60.1 38 73.7
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-07 59.7 40 70.0
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.6e-07 59.7 38 68.4
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.6e-07 59.7 182 25.8
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.1e-07 59.3 38 71.1
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.8e-07 58.9 38 65.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.8e-07 58.9 38 71.1
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 2.8e-07 58.9 38 71.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.8e-07 58.9 39 66.7
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 3.6e-07 58.5 69 49.3
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 3.6e-07 58.5 30 83.3
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 6.2e-07 57.8 33 75.8
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 6.2e-07 57.8 38 65.8
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 8.0e-07 57.4 38 65.8
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 8.0e-07 57.4 38 65.8
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 8.0e-07 57.4 38 65.8
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 8.0e-07 57.4 38 65.8
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 8.0e-07 57.4 45 60.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 8.0e-07 57.4 38 68.4
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 8.0e-07 57.4 37 70.3
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 65.8
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 65.8
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 65.8
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 65.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 65.8
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.1e-06 57.0 38 68.4
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.4e-06 56.6 31 83.9
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.8e-06 56.2 38 63.2
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.8e-06 56.2 38 68.4
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.8e-06 56.2 37 70.3
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.3e-06 55.8 30 80.0
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.3e-06 55.8 29 82.8
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 2.3e-06 55.8 35 68.6
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.3e-06 55.8 29 82.8
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 3.1e-06 55.5 33 75.8
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 4.0e-06 55.1 29 82.8
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-06 55.1 36 69.4
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 5.2e-06 54.7 42 52.4
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 6.8e-06 54.3 40 65.0
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 6.8e-06 54.3 46 58.7


User provided reference genes

Program Settings