Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.1e-53 213.0 109 100.0
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.4e-32 140.2 75 97.3
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.4e-32 140.2 75 97.3
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.4e-32 140.2 75 97.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.3e-30 135.6 75 94.7
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-30 135.2 75 94.7
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.0e-25 120.2 75 82.7
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.0e-25 117.9 75 81.3
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.0e-25 117.9 75 78.7
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 2.8e-23 112.1 99 66.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.0e-22 110.2 85 70.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-22 109.4 86 68.6
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-22 109.4 86 68.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.8e-22 109.4 85 72.9
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.0e-22 108.6 85 70.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.0e-22 108.6 87 71.3
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 4.0e-22 108.2 85 69.4
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 8.9e-22 107.1 85 71.8
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.2e-21 106.7 85 71.8
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.2e-21 106.7 85 71.8
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.5e-21 106.3 85 70.6
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.6e-21 105.5 85 70.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 3.4e-21 105.1 85 70.6
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.4e-21 104.8 85 67.1
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 5.7e-21 104.4 85 69.4
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 5.7e-21 104.4 85 70.6
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 7.5e-21 104.0 86 69.8
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.8e-21 103.6 85 69.4
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 9.8e-21 103.6 127 51.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.7e-20 102.8 85 69.4
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.8e-20 102.1 85 68.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.8e-20 102.1 85 67.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.8e-20 102.1 85 67.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.7e-20 101.7 74 71.6
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.7e-20 101.7 85 68.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 4.9e-20 101.3 85 68.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.9e-20 101.3 86 67.4
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 6.3e-20 100.9 86 67.4
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.1e-19 100.1 85 65.9
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.4e-19 99.8 85 69.4
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.8e-19 99.4 85 69.4
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-19 99.4 86 66.3
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.8e-19 99.4 86 66.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.8e-19 99.4 85 67.1
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-19 99.0 75 78.7
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.4e-19 99.0 86 68.6
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-19 97.8 86 65.1
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.0e-19 97.4 74 71.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 7.0e-19 97.4 84 67.9
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 7.0e-19 97.4 75 76.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 9.2e-19 97.1 82 67.1
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 9.2e-19 97.1 75 78.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.2e-18 96.7 86 62.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.0e-18 95.9 84 69.0
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 2.0e-18 95.9 84 65.5
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 2.7e-18 95.5 74 78.4
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.5e-18 95.1 74 68.9
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.5e-18 94.7 84 67.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 5.9e-18 94.4 75 76.0
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 5.9e-18 94.4 84 64.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.0e-17 93.6 75 77.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.7e-17 92.8 99 58.6
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.3e-17 92.4 86 61.6
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 2.3e-17 92.4 84 65.5
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 8.6e-17 90.5 74 68.9
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 8.6e-17 90.5 86 62.8
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.1e-16 90.1 86 60.5
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 1.1e-16 90.1 77 68.8
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.5e-16 89.7 86 61.6
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-16 89.4 85 58.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.9e-16 89.4 80 65.0
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.5e-16 89.0 79 63.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-16 88.6 72 68.1
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 3.3e-16 88.6 84 63.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 5.6e-16 87.8 88 59.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.3e-16 87.4 88 59.1
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.6e-15 86.3 86 60.5
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.6e-15 86.3 85 60.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-15 85.9 88 58.0
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-15 85.9 85 58.8
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-15 85.9 85 58.8
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.7e-15 84.7 85 57.6
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.7e-15 84.7 86 57.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 4.7e-15 84.7 86 58.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 6.1e-15 84.3 86 54.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 8.0e-15 84.0 85 58.8
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.0e-15 84.0 85 58.8
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-14 83.6 88 56.8
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-14 83.6 88 56.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.4e-14 83.2 77 62.3
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.4e-14 83.2 88 58.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.8e-14 82.8 86 60.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.8e-14 82.8 86 60.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.8e-14 82.8 91 52.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.8e-14 82.8 86 57.0
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 3.0e-14 82.0 86 54.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.0e-14 82.0 75 69.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 4.0e-14 81.6 88 58.0
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 4.0e-14 81.6 86 54.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.8e-14 80.9 85 54.1
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 8.9e-14 80.5 86 53.5
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.5e-13 79.7 86 59.3
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-13 79.3 85 54.1
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.0e-13 79.3 89 51.7
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.6e-13 79.0 85 56.5
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 3.4e-13 78.6 129 45.7
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 4.4e-13 78.2 88 59.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.4e-13 78.2 88 58.0
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 5.8e-13 77.8 52 75.0
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.3e-12 76.6 90 54.4
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.2e-12 75.9 86 51.2
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.9e-12 74.7 86 52.3
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 4.9e-12 74.7 90 50.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 6.4e-12 74.3 134 41.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 8.3e-12 73.9 88 58.0
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.3e-12 73.9 87 54.0
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.3e-12 73.9 87 58.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-11 73.6 86 55.8
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.4e-11 73.2 85 55.3
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.9e-11 72.8 86 55.8
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.4e-11 72.4 85 49.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 4.1e-11 71.6 86 52.3
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.1e-11 71.6 87 54.0
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.0e-11 70.9 88 50.0
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 7.0e-11 70.9 86 47.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 9.2e-11 70.5 86 54.7
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.2e-10 70.1 88 51.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.6e-10 69.7 85 55.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.6e-10 69.7 85 55.3
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.6e-10 69.7 85 55.3
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.6e-10 69.7 86 53.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.6e-10 69.7 83 53.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.6e-10 69.7 83 53.0
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 2.7e-10 68.9 86 52.3
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.7e-10 68.9 87 55.2
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.5e-10 68.6 150 36.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.3e-09 66.6 85 51.8
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.3e-09 65.9 62 59.7
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 2.3e-09 65.9 116 44.0
CAN.G215.18 Capsicum annuum HOM05D004104 ORTHO05D004755 2.3e-09 65.9 56 67.9
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.0e-09 65.5 58 67.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 8.6e-09 63.9 60 60.0
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.6e-09 63.9 53 71.7
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.5e-08 63.2 63 52.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.5e-08 62.4 87 48.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.3e-08 62.0 49 69.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.3e-08 62.0 87 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.6e-08 61.2 84 46.4
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.8e-07 58.9 48 68.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.6e-07 58.5 33 81.8
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.7e-07 58.2 91 45.1
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 6.2e-07 57.8 48 72.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.4e-06 56.6 52 65.4


User provided reference genes

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