Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G8954.1 Capsicum annuum HOM05D001125 ORTHO05D003189 7.0e-70 268.1 254 100.0
CAN.G397.44 Capsicum annuum HOM05D001125 ORTHO05D003189 5.7e-64 248.4 253 95.7
CAN.G1972.1 Capsicum annuum HOM05D001125 ORTHO05D003189 6.6e-52 208.4 249 90.4
CAN.G532.80 Capsicum annuum HOM05D001125 ORTHO05D003189 6.6e-52 208.4 249 90.4
CAN.G397.60 Capsicum annuum HOM05D001125 ORTHO05D003189 4.4e-48 195.7 253 87.4
PGSC0003DMG400021859 Solanum tuberosum HOM05D001125 ORTHO05D003189 7.8e-45 184.9 254 80.7
Sopen10g004070 Solanum pennellii HOM05D001125 ORTHO05D003189 8.6e-44 181.4 267 81.6
Solyc10g008210.3 Solanum lycopersicum HOM05D001125 ORTHO05D003189 1.1e-43 181.0 267 81.3
CAN.G1762.1 Capsicum annuum HOM05D001125 ORTHO05D003189 6.8e-33 145.2 112 76.8
CAN.G11130.1 Capsicum annuum HOM05D001125 ORTHO05D003189 1.4e-30 137.5 181 97.8
Nitab4.5_0006721g0030 Nicotiana tabacum HOM05D001125 ORTHO05D003189 4.1e-30 136.0 267 41.2
Nitab4.5_0004959g0070 Nicotiana tabacum HOM05D001125 ORTHO05D003189 2.7e-29 133.3 267 45.3
Solyc12g005480.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 4.4e-24 115.9 254 38.2
Sopen12g001480 Solanum pennellii HOM05D001125 ORTHO05D003189 6.4e-23 112.1 254 37.4
CAN.G1874.1 Capsicum annuum HOM05D001125 ORTHO05D003189 1.2e-21 107.8 62 95.2
Peaxi162Scf00008g00612 Petunia axillaris HOM05D001125 ORTHO05D003189 1.2e-21 107.8 255 38.0
PGSC0003DMG400013743 Solanum tuberosum HOM05D001125 ORTHO05D003189 1.6e-21 107.5 255 36.5
CAN.G1509.1 Capsicum annuum HOM05D001125 ORTHO05D003189 9.6e-19 98.2 51 96.1
Nitab4.5_0002350g0080 Nicotiana tabacum HOM05D001125 ORTHO05D003189 1.6e-18 97.4 255 35.3
CAN.G988.4 Capsicum annuum HOM05D001125 ORTHO05D003189 1.4e-17 94.4 258 33.7
Cc05_g07520 Coffea canephora HOM05D001125 ORTHO05D003189 1.8e-17 94.0 92 64.1
CAN.G209.29 Capsicum annuum HOM05D001125 ORTHO05D003189 2.4e-17 93.6 113 54.0
Hma1.2p1_0002F.1_g002120 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 6.9e-17 92.0 92 62.0
Manes.13G144200 Manihot esculenta HOM05D001125 ORTHO05D003189 1.5e-16 90.9 98 55.1
CAN.G1110.1 Capsicum annuum HOM05D001125 ORTHO05D003189 2.6e-16 90.1 50 90.0
Actinidia11095 Actinidia chinensis HOM05D001125 ORTHO05D003189 5.8e-16 89.0 97 57.7
Nitab4.5_0011687g0020 Nicotiana tabacum HOM05D001125 ORTHO05D003189 7.6e-16 88.6 93 61.3
THA.LOC104801165 Tarenaya hassleriana HOM05D001125 ORTHO05D003189 7.6e-16 88.6 118 49.2
CAN.G282.1 Capsicum annuum HOM05D000846 ORTHO05D001340 1.3e-15 87.8 46 93.5
Dinv04810 Davidia involucrata HOM05D001125 ORTHO05D003189 1.3e-15 87.8 92 60.9
Haze_13207 Corylus avellana HOM05D001125 ORTHO05D003189 1.7e-15 87.4 91 56.0
QL08p039736 Quercus lobata HOM05D001125 ORTHO05D003189 2.2e-15 87.0 91 54.9
CiPaw.03G179800 Carya illinoinensis HOM05D001125 ORTHO05D003189 3.8e-15 86.3 91 56.0
Sopen07g027760 Solanum pennellii HOM05D001125 ORTHO05D003189 3.8e-15 86.3 112 52.7
Eucgr.A01835 Eucalyptus grandis HOM05D001125 ORTHO05D003189 4.9e-15 85.9 91 58.2
Solyc07g053790.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 4.9e-15 85.9 112 52.7
Dinv06876 Davidia involucrata HOM05D001125 ORTHO05D003189 7.1e-14 82.0 104 53.8
Potri.017G013100 Populus trichocarpa HOM05D001125 ORTHO05D003189 1.2e-13 81.3 98 52.0
Oeu044723.1 Olea europaea HOM05D001125 ORTHO05D003189 1.6e-13 80.9 76 63.2
Aa31LG1G8990 Aethionema arabicum HOM05D001125 ORTHO05D003189 2.7e-13 80.1 91 51.6
Oeu036072.3 Olea europaea HOM05D001125 ORTHO05D003189 2.7e-13 80.1 113 50.4
MSTRG.6668 Avicennia marina HOM05D001125 ORTHO05D003189 1.0e-12 78.2 91 54.9
Carub.0001s0288 Capsella rubella HOM05D001125 ORTHO05D003189 1.3e-12 77.8 111 43.2
Sp1g02640 Schrenkiella parvula HOM05D001125 ORTHO05D003189 1.3e-12 77.8 105 45.7
Sabra17G0010600 Salix brachista HOM05D001125 ORTHO05D003189 1.8e-12 77.4 98 50.0
Sc21g0003100 Simmondsia chinensis HOM05D001125 ORTHO05D003189 1.8e-12 77.4 93 53.8
PGR042G1351 Punica granatum HOM05D001125 ORTHO05D003189 2.3e-12 77.0 92 55.4
CSS0025160 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D003189 3.0e-12 76.6 118 44.9
CARHR003110 Cardamine hirsuta HOM05D001125 ORTHO05D003189 3.9e-12 76.3 101 44.6
Lj1C712T4 Lonicera japonica HOM05D001125 ORTHO05D003189 5.1e-12 75.9 113 46.0
MSTRG.14940 Avicennia marina HOM05D001125 ORTHO05D003189 8.7e-12 75.1 106 53.8
A10p02320 Brassica napus HOM05D001125 ORTHO05D003189 1.1e-11 74.7 105 43.8
Thhalv10006864m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 1.1e-11 74.7 105 44.8
Prupe.3G140300 Prunus persica HOM05D001125 ORTHO05D003189 1.5e-11 74.3 107 46.7
Hma1.2p1_2181F.1_g316280 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 1.9e-11 73.9 74 63.5
vmacro12331 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 1.9e-11 73.9 95 53.7
C05p02130 Brassica napus HOM05D001125 ORTHO05D003189 3.3e-11 73.2 105 42.9
BolC5t28990H Brassica oleracea HOM05D001125 ORTHO05D003189 3.3e-11 73.2 105 42.9
RcHm_v2.0_Chr2g0127601 Rosa chinensis HOM05D001125 ORTHO05D003189 4.3e-11 72.8 104 47.1
FvH4_6g26550 Fragaria vesca HOM05D001125 ORTHO05D003189 5.6e-11 72.4 104 46.2
Potri.007G138600 Populus trichocarpa HOM05D001125 ORTHO05D003189 5.6e-11 72.4 88 50.0
Sed0012231 Sechium edule HOM05D001125 ORTHO05D003189 5.6e-11 72.4 94 47.9
Atru.chr6.2891 Acer truncatum HOM05D001125 ORTHO05D003189 9.6e-11 71.6 91 51.6
CANSAT64G2845 Cannabis sativa HOM05D001125 ORTHO05D003189 9.6e-11 71.6 92 47.8
Cpa.g.sc83.73 Carica papaya HOM05D001125 ORTHO05D003189 9.6e-11 71.6 91 52.7
Migut.M00163 Erythranthe guttata HOM05D001125 ORTHO05D003189 9.6e-11 71.6 112 49.1
Ah.01g004100 Amaranthus hybridus HOM05D001125 ORTHO05D003189 1.3e-10 71.2 124 40.3
FAN05G4313 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.3e-10 71.2 104 45.2
Nn1g06463 Nelumbo nucifera HOM05D001125 ORTHO05D003189 1.3e-10 71.2 92 54.3
Sed0000582 Sechium edule HOM05D001125 ORTHO05D003189 1.3e-10 71.2 112 42.0
MD09G1243900 Malus domestica HOM05D001125 ORTHO05D003189 1.6e-10 70.9 91 51.6
AT1G03780 Arabidopsis thaliana HOM05D001125 ORTHO05D003189 2.1e-10 70.5 111 43.2
FAN20G0613 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.1e-10 70.5 110 43.6
Sabra07G0111700 Salix brachista HOM05D001125 ORTHO05D003189 2.1e-10 70.5 103 44.7
CsaV3_7G005850 Cucumis sativus L. HOM05D001125 ORTHO05D003189 2.8e-10 70.1 116 41.4
TWI14G1126 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 2.8e-10 70.1 93 50.5
unitig_46.g18245 Utricularia gibba HOM05D001125 ORTHO05D003189 2.8e-10 70.1 70 54.3
MD17G1235800 Malus domestica HOM05D001125 ORTHO05D003189 3.6e-10 69.7 72 56.9
AL1G13330 Arabidopsis lyrata HOM05D001125 ORTHO05D003189 4.8e-10 69.3 100 45.0
FAN17G1093 Fragaria x ananassa HOM05D001125 ORTHO05D003189 4.8e-10 69.3 101 42.6
Rhsim06G0138900 Rhododendron simsii HOM05D001125 ORTHO05D003189 6.2e-10 68.9 97 52.6
BraA10t42499Z Brassica rapa HOM05D001125 ORTHO05D003189 1.1e-09 68.2 106 41.5
Sabra15G0065200 Salix brachista HOM05D001125 ORTHO05D003189 1.1e-09 68.2 103 43.7
Hund07885 Selenicereus undatus HOM05D001125 ORTHO05D003189 1.4e-09 67.8 123 40.7
Ciclev10014346m.g Citrus clementina HOM05D001125 ORTHO05D003189 1.8e-09 67.4 92 53.3
FAN24G2829 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.8e-09 67.4 110 43.6
HanXRQChr17g0554381 Helianthus annuus HOM05D001125 ORTHO05D003189 1.8e-09 67.4 99 48.5
FvH4_6g25690 Fragaria vesca HOM05D001125 ORTHO05D003189 2.4e-09 67.0 110 42.7
FAN02G2881 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.1e-09 66.6 105 45.7
TWI23G1275 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 3.1e-09 66.6 93 49.5
SalBow7G3984 Salvia bowleyana HOM05D001125 ORTHO05D003189 4.0e-09 66.2 93 50.5
SGA_v2.0_scaffold70G23508 Striga asiatica HOM05D001125 ORTHO05D003189 4.0e-09 66.2 93 50.5
GSVIVG01020580001 Vitis vinifera HOM05D001125 ORTHO05D003189 4.0e-09 66.2 70 58.6
FAN09G1980 Fragaria x ananassa HOM05D001125 ORTHO05D003189 5.3e-09 65.9 104 43.3
TAR629G2008 Trochodendron aralioides HOM05D001125 ORTHO05D003189 6.9e-09 65.5 88 53.4
FAN14G4163 Fragaria x ananassa HOM05D001125 ORTHO05D003189 9.0e-09 65.1 81 48.1
AUR62038884 Chenopodium quinoa HOM05D001125 ORTHO05D003189 1.2e-08 64.7 93 46.2
BcaC05g24510 Brassica carinata HOM05D001125 ORTHO05D003189 1.5e-08 64.3 76 50.0
DCAR_021255 Daucus carota HOM05D001125 ORTHO05D003189 1.5e-08 64.3 107 43.0
BcaC07g42227 Brassica carinata HOM05D001125 ORTHO05D003189 2.6e-08 63.5 104 45.2
SalBow7G0071 Salvia bowleyana HOM05D001125 ORTHO05D003189 2.6e-08 63.5 93 49.5
BcaB08g37326 Brassica carinata HOM05D001125 ORTHO05D003189 3.4e-08 63.2 73 50.7
BcaNung06826 Brassica carinata HOM05D001125 ORTHO05D003189 3.4e-08 63.2 73 50.7
AUR62038976 Chenopodium quinoa HOM05D001125 ORTHO05D003189 3.4e-08 63.2 93 45.2
MELO3C018707.2 Cucumis melo HOM05D001125 ORTHO05D003189 3.4e-08 63.2 116 37.9
ECA233G3717 Erigeron canadensis HOM05D001125 ORTHO05D003189 4.5e-08 62.8 93 48.4
TAR627G0354 Trochodendron aralioides HOM05D001125 ORTHO05D003189 4.5e-08 62.8 100 46.0
ClCG07G002500 Citrullus lanatus HOM05D001125 ORTHO05D003189 5.8e-08 62.4 115 39.1
COL.COLO4_05959 Corchorus olitorius HOM05D001125 ORTHO05D003189 9.9e-08 61.6 104 44.2
FAN24G1048 Fragaria x ananassa HOM05D001125 ORTHO05D003189 9.9e-08 61.6 110 40.9
Lsat_1_v5_gn_8_134661 Lactuca sativa HOM05D001125 ORTHO05D003189 9.9e-08 61.6 107 48.6
Peaxi162Scf00981g00045 Petunia axillaris HOM05D001125 ORTHO05D003189 9.9e-08 61.6 127 42.5
Thecc.02G183400 Theobroma cacao HOM05D001125 ORTHO05D003189 9.9e-08 61.6 104 46.2
CAN.G1337.21 Capsicum annuum HOM05D001125 ORTHO05D115630 1.3e-07 61.2 49 71.4
TAR627G0421 Trochodendron aralioides HOM05D001125 ORTHO05D003189 2.2e-07 60.5 100 46.0
Aqoxy1G02346 Aquilegia oxysepala HOM05D001125 ORTHO05D003189 3.8e-07 59.7 107 44.9
FAN02G4535 Fragaria x ananassa HOM05D001125 ORTHO05D003189 4.9e-07 59.3 104 42.3
HanXRQChr17g0559321 Helianthus annuus HOM05D001125 ORTHO05D003189 4.9e-07 59.3 101 44.6
FvH4_6g25731 Fragaria vesca HOM05D001125 ORTHO05D003189 1.1e-06 58.2 110 40.9
SGA_v2.0_scaffold34G13940 Striga asiatica HOM05D001125 ORTHO05D003189 5.5e-06 55.8 88 45.5
Gohir.A03G155500 Gossypium hirsutum HOM05D001125 ORTHO05D003189 7.1e-06 55.5 105 44.8
MBI02_g32401_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D003189 7.1e-06 55.5 97 48.5


User provided reference genes

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