Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 9.6e-49 196.4 94 100.0
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 94 87.2
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 94 87.2
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 94 87.2
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 5.8e-38 160.6 94 85.1
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 9.9e-38 159.8 94 84.0
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 9.9e-38 159.8 94 84.0
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 85.1
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 85.1
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 1.7e-37 159.1 94 84.0
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 2.2e-37 158.7 94 84.0
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.9e-37 158.3 94 85.1
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.8e-37 157.9 94 84.0
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.8e-37 157.9 94 84.0
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 6.4e-37 157.1 93 83.9
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.4e-37 157.1 94 84.0
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.4e-37 156.8 94 83.0
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.4e-37 156.8 91 84.6
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.1e-36 156.4 94 83.0
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.1e-36 156.4 94 83.0
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 1.4e-36 156.0 94 83.0
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.9e-36 155.6 94 81.9
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.4e-36 155.2 94 81.9
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.2e-36 154.8 94 81.9
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.2e-36 154.5 94 81.9
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 7.1e-36 153.7 94 84.0
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 7.1e-36 153.7 94 84.0
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.3e-36 153.3 94 80.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 2.1e-35 152.1 94 81.9
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 2.7e-35 151.8 94 81.9
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.0e-35 150.6 94 80.9
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.0e-35 150.6 94 80.9
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.9e-35 150.2 91 79.1
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.8e-34 149.1 94 81.9
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.3e-34 148.7 94 81.9
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 2.3e-34 148.7 94 79.8
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 5.6e-33 144.1 94 77.7
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 5.6e-33 144.1 94 77.7
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 5.6e-33 144.1 94 77.7
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 5.6e-33 144.1 94 77.7
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 7.4e-33 143.7 83 84.3
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 7.4e-33 143.7 94 77.7
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.1e-32 142.1 94 76.6
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 2.1e-32 142.1 81 86.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-32 141.7 81 86.4
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.7e-32 141.4 94 77.7
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 4.8e-32 141.0 82 84.1
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.2e-32 140.6 94 74.5
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.1e-32 140.2 94 76.6
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.1e-31 139.8 82 82.9
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 1.4e-31 139.4 83 81.9
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.8e-31 139.0 81 84.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 2.4e-31 138.7 80 83.8
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.0e-31 137.9 91 79.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.8e-30 134.0 88 77.3
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.8e-29 131.3 82 75.6
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.8e-29 131.3 82 76.8
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 6.4e-29 130.6 76 82.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 6.4e-29 130.6 94 73.4
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.4e-28 129.4 79 78.5
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 9.3e-28 126.7 94 69.1
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 2.7e-27 125.2 73 83.6
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-27 124.4 72 84.7
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.5e-25 119.4 69 84.1
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.5e-25 119.4 69 84.1
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 3.3e-25 118.2 79 75.9
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 4.3e-25 117.9 82 70.7
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 9.6e-25 116.7 79 75.9
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.3e-24 116.3 72 77.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.6e-24 115.9 66 84.8
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 8.2e-24 113.6 94 67.0
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-23 113.2 73 76.7
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 1.1e-23 113.2 66 84.8
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 4.0e-23 111.3 63 85.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 5.3e-23 110.9 67 82.1
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.5e-22 109.4 94 62.8
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.5e-22 109.4 63 85.7
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.3e-21 106.3 61 83.6
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-20 103.2 58 84.5
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-20 103.2 58 84.5
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-20 103.2 58 84.5
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.5e-20 100.9 73 71.2
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 7.1e-20 100.5 58 81.0
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 9.3e-20 100.1 65 75.4
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 6.7e-18 94.0 52 84.6
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.7e-18 93.6 59 78.0
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.9e-17 92.4 62 75.8
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.4e-17 90.5 58 79.3
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 9.7e-17 90.1 52 80.8
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-16 89.0 62 75.8
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 2.4e-15 85.5 54 81.5
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 5.3e-15 84.3 61 70.5
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.6e-14 82.0 49 81.6
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 3.4e-14 81.6 55 74.5
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.0e-13 80.1 46 84.8
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-13 79.7 50 76.0
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.9e-13 78.6 43 88.4
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 5.0e-13 77.8 44 81.8
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 2.5e-12 75.5 44 79.5
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.5e-12 74.3 38 86.8
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 1.2e-11 73.2 39 84.6
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.2e-11 73.2 40 87.5
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.6e-11 71.6 41 85.4
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.6e-11 71.2 46 73.9
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 7.9e-11 70.5 67 58.2
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.4e-10 69.7 44 77.3
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 7.4e-09 63.9 37 81.1
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 1.7e-08 62.8 44 72.7
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 3.1e-07 58.5 35 82.9
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.3e-07 57.8 31 80.6
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 4.5e-06 54.7 32 78.1


User provided reference genes

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