Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 7.2e-46 186.8 89 100.0
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 87.2
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 87.2
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-37 159.1 94 87.2
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 8.0e-37 156.8 94 85.1
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 8.0e-37 156.8 94 85.1
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.0e-36 156.4 94 85.1
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.4e-36 156.0 93 86.0
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.4e-36 156.0 93 86.0
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-36 155.6 94 84.0
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.3e-36 155.2 94 85.1
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.3e-36 155.2 94 85.1
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-36 154.8 94 84.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 84.0
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.9e-36 154.5 94 84.0
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.7e-36 153.7 94 84.0
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.7e-36 153.7 94 84.0
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.1e-35 152.9 93 83.9
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.0e-35 152.1 94 84.0
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 2.0e-35 152.1 94 83.0
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 2.0e-35 152.1 94 83.0
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.6e-35 151.8 94 83.0
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-35 151.4 94 81.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.3e-35 151.4 94 83.0
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.4e-35 151.0 94 81.9
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.7e-35 150.6 94 83.0
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 5.7e-35 150.6 94 83.0
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-34 149.4 94 81.9
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 94 81.9
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 94 81.9
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 94 81.9
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-34 149.4 94 81.9
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.7e-34 149.1 94 80.9
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.7e-34 149.1 94 81.9
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 2.2e-34 148.7 94 81.9
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-34 148.7 94 81.9
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.7e-34 147.9 94 80.9
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.7e-34 147.9 94 83.0
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.8e-34 147.5 92 79.3
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-33 146.4 94 80.9
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 7.0e-33 143.7 94 78.7
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.1e-33 143.3 94 79.8
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 3.5e-32 141.4 94 78.7
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-32 141.4 94 78.7
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-31 137.9 94 76.6
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 5.0e-31 137.5 83 83.1
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.9e-30 135.6 81 85.2
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 3.2e-30 134.8 82 82.9
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.2e-30 133.7 94 73.4
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.4e-30 133.3 82 81.7
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 9.4e-30 133.3 83 80.7
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-29 132.9 94 75.5
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.1e-29 132.1 81 84.0
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 4.7e-29 131.0 94 71.3
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.7e-29 131.0 94 75.5
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 4.7e-29 131.0 89 78.7
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.4e-28 129.4 81 81.5
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 1.8e-28 129.0 82 78.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 6.7e-28 127.1 84 76.2
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.5e-27 123.6 87 72.4
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 2.8e-26 121.7 79 77.2
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-25 119.0 74 81.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.8e-25 119.0 79 75.9
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 5.3e-25 117.5 84 71.4
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 9.1e-25 116.7 72 81.9
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 5.9e-24 114.0 79 74.7
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.3e-23 112.8 86 65.1
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.7e-23 112.5 79 74.7
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-23 112.1 69 82.6
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-23 112.1 69 82.6
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 3.8e-23 111.3 94 67.0
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 5.0e-23 110.9 94 64.9
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.9e-22 109.0 74 74.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.5e-22 108.6 66 83.3
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 4.2e-22 107.8 60 88.3
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 5.5e-22 107.5 60 88.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 5.5e-22 107.5 80 72.5
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.2e-21 106.3 72 75.0
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 6.1e-21 104.0 60 83.3
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 8.0e-21 103.6 55 90.9
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.2e-20 100.9 85 63.5
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.2e-20 100.9 85 63.5
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.2e-20 100.9 85 63.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.4e-19 98.2 61 82.0
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 9.8e-19 96.7 64 75.0
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-18 95.9 58 84.5
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.8e-17 92.4 73 68.5
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 9.1e-17 90.1 60 78.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.9e-16 87.4 49 85.7
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 7.7e-16 87.0 55 78.2
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.7e-15 85.9 46 89.1
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 2.3e-15 85.5 50 80.0
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.3e-15 85.5 59 74.6
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.3e-15 85.5 69 72.5
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.9e-15 85.1 58 74.1
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.0e-15 84.3 52 80.8
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 8.6e-15 83.6 55 78.2
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 1.1e-14 83.2 44 90.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.6e-13 78.2 46 80.4
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 4.7e-13 77.8 45 80.0
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.0e-12 75.1 41 87.8
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.7e-10 68.2 62 61.3
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 4.9e-10 67.8 44 77.3
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 2.4e-09 65.5 41 78.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 2.4e-09 65.5 44 75.0
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 7.0e-09 63.9 84 47.6
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 2.0e-08 62.4 70 54.3
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-08 61.6 35 85.7
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.5e-08 61.2 43 72.1
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-06 56.2 37 75.7
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.3e-06 55.1 37 75.7
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 3.3e-06 55.1 94 36.2
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 5.6e-06 54.3 28 85.7


User provided reference genes

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