Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 4.2e-96 354.8 186 100.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 2.4e-83 312.4 186 89.2
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 4.5e-82 308.1 193 86.5
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 5.8e-82 307.8 186 88.2
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 4.9e-81 304.7 190 86.8
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.1e-80 300.8 186 87.6
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 3.5e-79 298.5 186 84.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.8e-78 296.2 186 83.9
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 1.8e-78 296.2 229 73.8
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.1e-77 293.5 186 84.9
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.9e-77 292.7 186 85.5
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 7.4e-77 290.8 196 79.1
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 7.4e-77 290.8 182 85.7
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 3.7e-76 288.5 186 82.8
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 8.2e-76 287.3 190 81.1
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 8.2e-76 287.3 190 81.1
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-75 287.0 197 78.7
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-75 286.6 195 78.5
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-75 286.6 195 78.5
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 5.3e-75 284.6 193 80.3
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-74 283.5 194 78.4
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.0e-74 282.7 189 82.5
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 7.6e-74 280.8 186 82.3
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 2.2e-73 279.3 189 78.8
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 1.4e-72 276.6 177 84.7
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-71 273.5 188 78.2
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-71 273.5 198 76.3
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.3e-68 261.2 186 78.5
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 5.0e-65 251.5 187 75.4
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.4e-64 250.0 186 74.2
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-63 246.9 159 84.3
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-63 246.9 159 84.3
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-63 246.9 159 84.3
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-63 246.9 159 84.3
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-63 246.9 159 84.3
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 2.4e-59 232.6 135 92.6
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 5.9e-58 228.0 134 89.6
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 5.9e-58 228.0 134 89.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.4e-54 216.9 136 83.8
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 5.1e-54 214.9 132 87.1
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 3.3e-53 212.2 147 77.6
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 2.8e-52 209.1 142 81.7
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 2.4e-51 206.1 136 81.6
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 9.1e-51 204.1 118 94.1
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-50 203.8 133 82.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-50 203.8 133 82.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-50 203.8 133 82.0
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.0e-49 200.7 135 80.7
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.3e-49 200.3 141 77.3
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-49 200.3 121 88.4
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.7e-49 199.9 129 82.9
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.9e-49 199.1 152 73.7
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 3.8e-49 198.7 138 78.3
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 6.5e-49 198.0 115 92.2
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 2.5e-48 196.1 123 85.4
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 4.2e-48 195.3 121 86.0
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 9.4e-48 194.1 141 74.5
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 3.6e-47 192.2 128 82.0
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.7e-47 191.8 131 80.9
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-46 190.3 133 76.7
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.8e-44 182.6 186 60.8
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 3.7e-44 182.2 130 73.8
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 3.1e-43 179.1 129 76.7
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 7.7e-42 174.5 124 75.0
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.0e-41 171.8 199 54.8
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 6.5e-41 171.4 98 92.9
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.1e-40 170.6 148 66.2
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.1e-39 164.9 107 83.2
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 6.1e-39 164.9 126 73.0
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 6.1e-39 164.9 126 73.0
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 6.1e-39 164.9 126 73.0
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.4e-38 163.7 93 94.6
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.0e-38 162.2 113 79.6
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-37 160.6 107 79.4
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-37 158.3 133 68.4
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 7.5e-37 157.9 158 62.0
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 3.7e-36 155.6 137 65.7
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 3.1e-35 152.5 105 78.1
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 3.1e-35 152.5 155 60.6
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.7e-34 149.4 95 81.1
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.5e-34 148.7 105 74.3
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 4.5e-34 148.7 123 68.3
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.0e-33 147.5 126 69.8
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.0e-33 145.2 95 83.2
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 5.0e-33 145.2 95 83.2
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.5e-32 142.9 91 80.2
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 4.2e-32 142.1 91 81.3
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 4.7e-31 138.7 136 58.1
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 4.7e-31 138.7 136 58.1
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.7e-31 138.7 94 83.0
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 6.1e-31 138.3 133 60.9
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 4.4e-29 132.1 94 74.5
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 7.5e-29 131.3 87 79.3
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 7.0e-27 124.8 90 75.6
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 6.6e-25 118.2 72 86.1
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 1.6e-23 113.6 77 79.2
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 2.8e-23 112.8 108 62.0
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.0e-23 111.3 72 84.7
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.4e-21 105.5 68 80.9
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-20 104.0 68 82.4
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.7e-20 103.6 73 76.7
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.2e-20 103.2 77 74.0
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.2e-20 103.2 76 75.0
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 1.1e-19 100.9 71 76.1
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 1.4e-19 100.5 66 77.3
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 1.8e-19 100.1 188 35.6
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 5.4e-19 98.6 69 73.9
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.5e-18 95.9 72 73.6
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 4.5e-18 95.5 74 74.3
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 1.0e-17 94.4 50 94.0
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 2.9e-17 92.8 71 71.8
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.9e-17 92.8 68 73.5
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 5.0e-17 92.0 60 80.0
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 6.6e-17 91.7 50 90.0
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.1e-16 90.9 60 76.7
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.5e-16 90.5 54 83.3
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.5e-16 90.5 57 82.5
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-16 90.5 54 85.2
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.3e-16 89.4 54 83.3
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.3e-16 89.0 54 81.5
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 7.3e-16 88.2 94 56.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-14 83.6 53 81.1
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 6.8e-14 81.6 56 75.0
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 8.9e-14 81.3 61 72.1
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 2.0e-13 80.1 49 83.7
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.1e-11 74.3 41 85.4
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.9e-11 73.6 49 73.5
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.9e-11 73.6 57 70.2
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-10 70.5 61 63.9
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.7e-10 69.7 64 60.9
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 6.0e-10 68.6 77 51.9
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.8e-10 68.2 61 62.3
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 1.7e-09 67.0 56 66.1
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 1.1e-08 64.3 41 78.0
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.5e-08 63.9 37 83.8
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.5e-08 63.9 37 83.8
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 2.1e-07 60.1 41 78.0
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 6.2e-07 58.5 83 47.0
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 8.9e-06 54.7 51 54.9


User provided reference genes

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