Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 6.4e-76 287.3 145 100.0
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 1.4e-38 163.3 102 77.5
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 4.0e-38 161.8 89 87.6
CAN.G729.11 Capsicum annuum HOM05D003504 ORTHO05D115363 9.0e-30 134.0 144 56.9
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.6e-23 113.2 86 67.4
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.7e-20 103.2 85 60.0
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 2.2e-20 102.8 85 62.4
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 2.2e-20 102.8 85 62.4
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 4.9e-20 101.7 57 82.5
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 4.9e-20 101.7 85 60.0
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 8.4e-20 100.9 85 58.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 8.4e-20 100.9 85 58.8
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 8.4e-20 100.9 85 60.0
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.1e-19 100.5 85 58.8
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-19 100.5 86 59.3
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-19 100.5 78 65.4
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 1.1e-19 100.5 78 65.4
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.9e-19 99.8 85 58.8
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.5e-19 99.4 85 58.8
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 2.5e-19 99.4 85 58.8
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 2.5e-19 99.4 86 59.3
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 2.5e-19 99.4 85 58.8
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 58.8
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.2e-19 99.0 78 65.4
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 3.2e-19 99.0 78 65.4
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.2e-19 99.0 85 57.6
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 4.2e-19 98.6 85 58.8
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 4.2e-19 98.6 85 58.8
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 4.2e-19 98.6 85 58.8
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 4.2e-19 98.6 78 64.1
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 5.5e-19 98.2 85 58.8
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 5.5e-19 98.2 85 57.6
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 5.5e-19 98.2 87 57.5
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 5.5e-19 98.2 85 60.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 7.1e-19 97.8 85 57.6
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 7.1e-19 97.8 85 57.6
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 7.1e-19 97.8 85 57.6
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 9.3e-19 97.4 78 62.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 9.3e-19 97.4 85 57.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 9.3e-19 97.4 85 57.6
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.2e-18 97.1 85 57.6
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.2e-18 97.1 78 62.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 1.2e-18 97.1 85 57.6
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.2e-18 97.1 85 55.3
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.2e-18 97.1 85 57.6
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.2e-18 97.1 78 64.1
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.2e-18 97.1 82 59.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.6e-18 96.7 63 73.0
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.6e-18 96.7 85 56.5
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 1.6e-18 96.7 85 55.3
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 57.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 56.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 56.5
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 2.1e-18 96.3 78 61.5
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 55.3
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 55.3
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 55.3
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 55.3
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 56.5
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.1e-18 96.3 85 56.5
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.7e-18 95.9 78 61.5
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 57.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 57.6
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 57.6
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 57.6
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 57.6
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 56.5
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 56.5
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 56.5
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 56.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 56.5
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.7e-18 95.9 84 58.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 55.3
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.7e-18 95.9 85 55.3
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 3.5e-18 95.5 55 78.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 3.5e-18 95.5 85 56.5
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 4.6e-18 95.1 85 57.6
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 4.6e-18 95.1 78 60.3
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 4.6e-18 95.1 62 71.0
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 4.6e-18 95.1 85 55.3
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 55.3
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 55.3
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 56.5
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 55.3
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 55.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 6.0e-18 94.7 85 55.3
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 7.9e-18 94.4 85 55.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.0e-17 94.0 85 55.3
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 1.0e-17 94.0 55 74.5
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.3e-17 93.6 78 59.0
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.8e-17 93.2 85 55.3
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.8e-17 93.2 85 51.8
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.8e-17 93.2 85 51.8
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.3e-17 92.8 84 53.6
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.3e-17 92.8 78 57.7
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 2.3e-17 92.8 54 77.8
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 2.3e-17 92.8 55 72.7
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 3.0e-17 92.4 57 75.4
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 3.0e-17 92.4 85 55.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 6.7e-17 91.3 78 56.4
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.7e-17 91.3 85 52.9
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 5.7e-16 88.2 78 56.4
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 1.6e-15 86.7 85 51.8
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.8e-15 85.9 55 70.9
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 8.2e-15 84.3 85 49.4
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.1e-14 84.0 85 47.1
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 2.0e-13 79.7 75 52.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 2.2e-12 76.3 55 61.8
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 2.9e-12 75.9 78 51.3
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 6.5e-12 74.7 55 54.5
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.4e-11 73.6 78 50.0
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.9e-11 73.2 55 58.2
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.2e-11 72.4 87 46.0
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.5e-11 71.6 78 48.7
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 7.2e-11 71.2 55 56.4
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 1.6e-10 70.1 79 49.4
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.4e-09 67.0 36 80.6
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.8e-09 66.6 64 46.9


User provided reference genes

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