Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.3e-131 472.2 234 100.0
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 4.7e-129 464.5 234 98.7
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 6.8e-128 460.7 234 97.9
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-124 449.5 234 95.7
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 5.8e-119 431.0 240 91.7
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.0e-115 420.2 237 89.0
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 8.1e-113 410.6 238 89.5
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 8.1e-113 410.6 237 88.6
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 6.9e-112 407.5 235 89.4
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.4e-111 405.2 235 88.9
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.3e-110 403.3 235 88.5
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 1.2e-108 396.7 201 98.0
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 3.0e-107 392.1 235 85.1
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 2.5e-106 389.0 235 83.8
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 9.0e-104 380.6 235 84.3
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 9.0e-104 380.6 235 84.3
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 1.5e-103 379.8 238 83.2
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 1.5e-103 379.8 238 83.2
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 1.5e-103 379.8 238 83.2
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 1.5e-103 379.8 238 83.2
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 1.5e-103 379.8 237 82.7
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 1.5e-103 379.8 237 82.7
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 4.5e-103 378.3 238 82.8
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 5.8e-103 377.9 206 92.2
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 1.7e-102 376.3 234 85.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.2e-101 372.1 203 91.6
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.3e-94 350.1 197 90.4
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 6.5e-94 347.8 219 84.9
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 4.1e-88 328.6 198 83.3
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 4.1e-88 328.6 198 83.3
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 4.1e-88 328.6 198 83.3
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 1.0e-86 323.9 196 85.2
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 4.2e-85 318.5 203 81.8
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 1.8e-83 313.2 192 84.4
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.1e-80 303.9 165 90.3
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.1e-80 303.9 165 90.3
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 8.5e-78 294.3 145 98.6
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 5.5e-77 291.6 168 88.1
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.1e-74 283.9 165 84.2
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 1.5e-74 283.5 215 69.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 3.3e-74 282.3 144 95.8
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.7e-73 280.0 163 84.7
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.9e-70 269.2 159 86.2
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 8.8e-67 257.7 150 86.7
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 7.4e-66 254.6 163 79.8
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 7.4e-66 254.6 165 79.4
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.7e-62 243.4 149 83.9
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.5e-61 240.4 235 57.4
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-61 240.0 134 91.0
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 2.5e-61 239.6 234 58.1
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 4.1e-56 222.2 134 82.1
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.7e-55 218.0 130 82.3
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 1.7e-54 216.9 143 77.6
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.8e-51 206.8 117 87.2
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.3e-51 206.5 124 82.3
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 3.4e-50 202.6 223 55.2
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 1.6e-47 193.7 234 52.6
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 2.0e-47 193.4 112 86.6
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.1e-45 187.6 112 82.1
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 2.8e-41 172.9 117 80.3
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 3.1e-40 169.5 171 56.7
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.6e-38 161.8 86 88.4
Gohir.A13G071500 Gossypium hirsutum HOM05D003517 ORTHO05D009798 3.6e-36 156.0 100 80.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 3.4e-34 149.4 91 79.1
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 4.3e-29 132.5 110 61.8
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.9e-27 124.8 111 60.4
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 2.0e-26 123.6 124 58.9
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-25 120.2 62 93.5
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 6.4e-25 118.6 80 77.5
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.7e-22 110.5 59 91.5
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 1.1e-21 107.8 61 85.2
BraSC159t45733Z Brassica rapa HOM05D003517 ORTHO05D009798 1.9e-21 107.1 86 69.8
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.5e-21 106.7 72 76.4
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 1.7e-17 94.0 49 93.9
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.7e-17 92.8 62 72.6
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 5.4e-16 89.0 61 75.4
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 4.6e-15 85.9 66 66.7
Nitab4.5_0010321g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.3e-14 83.6 65 73.8
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.5e-10 70.9 34 91.2
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 3.7e-09 66.2 37 81.1
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.4e-08 64.3 34 91.2
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.5e-07 59.7 39 76.9
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.6e-07 59.3 28 96.4
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 6.0e-07 58.9 42 66.7
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 7.8e-07 58.5 28 96.4
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 7.8e-07 58.5 28 96.4
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 7.8e-07 58.5 28 96.4
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 7.8e-07 58.5 28 96.4
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.0e-06 56.6 28 89.3


User provided reference genes

Program Settings