Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G845.21 Capsicum annuum HOM05D001878 ORTHO05D001737 1.5e-162 576.2 318 100.0
PGSC0003DMG400020508 Solanum tuberosum HOM05D001878 ORTHO05D001737 2.1e-100 369.8 343 70.3
Sopen08g003120 Solanum pennellii HOM05D001878 ORTHO05D001737 1.3e-97 360.5 345 68.4
Solyc08g007170.1 Solanum lycopersicum HOM05D001878 ORTHO05D001737 4.2e-96 355.5 343 68.2
Nitab4.5_0006594g0090 Nicotiana tabacum HOM05D001878 ORTHO05D001737 9.7e-77 291.2 325 60.9
Nitab4.5_0000185g0200 Nicotiana tabacum HOM05D001878 ORTHO05D001737 6.3e-76 288.5 327 60.9
Peaxi162Scf00102g00086 Petunia axillaris HOM05D001878 ORTHO05D001737 1.6e-71 273.9 327 59.3
Cc08_g11310 Coffea canephora HOM05D001878 ORTHO05D001737 8.3e-36 155.2 371 36.1
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 4.4e-29 132.9 314 37.3
CSS0022915 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 2.2e-28 130.6 341 38.1
DCAR_008328 Daucus carota HOM05D001878 ORTHO05D001737 2.2e-28 130.6 371 34.8
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 9.2e-27 125.2 365 33.7
Actinidia25911 Actinidia chinensis HOM05D001878 ORTHO05D001737 1.0e-25 121.7 371 36.9
vmacro21925 Vaccinium macrocarpon HOM05D001878 ORTHO05D001737 5.0e-25 119.4 342 35.7
Dinv25137 Davidia involucrata HOM05D001878 ORTHO05D001737 6.6e-25 119.0 406 33.3
Rhsim07G0136200 Rhododendron simsii HOM05D001878 ORTHO05D001737 3.3e-24 116.7 340 34.1
MSTRG.10274 Avicennia marina HOM05D001878 ORTHO05D001737 6.1e-23 112.5 342 38.9
Hma1.2p1_0840F.1_g226660 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 3.1e-22 110.2 364 35.7
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 5.2e-22 109.4 318 35.2
Duzib068G1299 Durio zibethinus HOM05D001878 ORTHO05D001737 9.2e-19 98.6 348 34.8
Lsat_1_v5_gn_3_15221 Lactuca sativa HOM05D001878 ORTHO05D001737 3.9e-17 93.2 308 30.8
Gohir.D12G215000 Gossypium hirsutum HOM05D001878 ORTHO05D001737 4.3e-16 89.7 329 34.3
ECA246G4732 Erigeron canadensis HOM05D001878 ORTHO05D001737 7.3e-16 89.0 315 30.2
HanXRQChr17g0533971 Helianthus annuus HOM05D001878 ORTHO05D001737 7.3e-16 89.0 318 29.6
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 9.5e-16 88.6 328 31.1
Lsat_1_v5_gn_3_15241 Lactuca sativa HOM05D001878 ORTHO05D001737 9.5e-16 88.6 342 28.4
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.2e-15 88.2 331 31.4
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 2.1e-15 87.4 322 30.7
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 2.8e-15 87.0 320 31.9
Gorai.008G230600 Gossypium raimondii HOM05D001878 ORTHO05D001737 3.6e-15 86.7 335 36.4
GSVIVG01003683001 Vitis vinifera HOM05D001878 ORTHO05D001737 3.6e-15 86.7 316 32.9
Ciclev10024664m.g Citrus clementina HOM05D001878 ORTHO05D001737 6.2e-15 85.9 365 35.1
Dinv28878 Davidia involucrata HOM05D001878 ORTHO05D001737 8.0e-15 85.5 85 60.0
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 8.0e-15 85.5 319 31.7
SGA_v2.0_scaffold94G28622 Striga asiatica HOM05D001878 ORTHO05D001737 8.0e-15 85.5 328 32.0
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 1.4e-14 84.7 324 32.4
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 1.8e-14 84.3 325 32.3
COL.COLO4_06677 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.8e-14 84.3 342 31.6
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 1.8e-14 84.3 319 30.7
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 3.1e-14 83.6 326 28.8
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 6.8e-14 82.4 347 30.0
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.2e-13 81.6 338 28.4
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.2e-13 81.6 338 28.4
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 1.2e-13 81.6 185 41.1
Thecc.03G239800 Theobroma cacao HOM05D001878 ORTHO05D001737 1.2e-13 81.6 342 35.1
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 1.5e-13 81.3 318 34.6
ECA246G4246 Erigeron canadensis HOM05D001878 ORTHO05D001737 1.5e-13 81.3 321 29.6
Lsat_1_v5_gn_6_94181 Lactuca sativa HOM05D001878 ORTHO05D001737 2.0e-13 80.9 322 31.1
MD07G1097000 Malus domestica HOM05D001878 ORTHO05D001737 4.4e-13 79.7 318 29.6
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 5.8e-13 79.3 323 30.0
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 5.8e-13 79.3 327 28.4
Gohir.A12G212500 Gossypium hirsutum HOM05D001878 ORTHO05D001737 5.8e-13 79.3 332 33.4
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 5.8e-13 79.3 329 29.8
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 7.5e-13 79.0 320 35.3
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 7.5e-13 79.0 333 31.2
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 9.8e-13 78.6 327 33.3
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 2.2e-12 77.4 318 32.7
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 2.2e-12 77.4 325 28.9
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 2.2e-12 77.4 312 30.8
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.9e-12 77.0 335 28.7
TWI60G1396 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.9e-12 77.0 329 29.8
Sc14g0001740 Simmondsia chinensis HOM05D001878 ORTHO05D001737 3.7e-12 76.6 321 30.8
HanXRQChr03g0089721 Helianthus annuus HOM05D001878 ORTHO05D001737 4.9e-12 76.3 318 28.6
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 6.4e-12 75.9 322 32.3
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 8.3e-12 75.5 315 26.7
TWI15G0285 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 8.3e-12 75.5 337 30.0
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 1.1e-11 75.1 315 28.9
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 1.4e-11 74.7 312 30.1
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 1.9e-11 74.3 333 29.7
PGR031G2290 Punica granatum HOM05D001878 ORTHO05D001737 1.9e-11 74.3 324 26.9
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 1.9e-11 74.3 320 31.6
Sed0021214 Sechium edule HOM05D001878 ORTHO05D001737 1.9e-11 74.3 312 26.0
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 1.9e-11 74.3 302 29.8
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 3.2e-11 73.6 323 29.7
HanXRQChr01g0016011 Helianthus annuus HOM05D001878 ORTHO05D001737 3.2e-11 73.6 314 29.6
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 3.2e-11 73.6 318 29.6
TAR375G1013 Trochodendron aralioides HOM05D001878 ORTHO05D001737 3.2e-11 73.6 324 32.7
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 4.1e-11 73.2 322 29.5
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 4.1e-11 73.2 326 29.4
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 5.4e-11 72.8 332 31.3
Prupe.2G121200 Prunus persica HOM05D001878 ORTHO05D001737 5.4e-11 72.8 322 28.9
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 7.0e-11 72.4 328 29.0
Sabra01G0120400 Salix brachista HOM05D001878 ORTHO05D001737 7.0e-11 72.4 392 27.3
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 7.0e-11 72.4 317 28.7
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 9.2e-11 72.0 318 27.7
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 9.2e-11 72.0 312 27.9
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 9.2e-11 72.0 326 30.4
Potri.001G150600 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.2e-10 71.6 382 26.7
Dinv43604 Davidia involucrata HOM05D001878 ORTHO05D001737 1.6e-10 71.2 318 30.5
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-10 71.2 299 30.4
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 2.1e-10 70.9 83 45.8
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.1e-10 70.9 321 30.8
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 2.7e-10 70.5 103 38.8
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 4.6e-10 69.7 326 29.4
FvH4_5g20390 Fragaria vesca HOM05D001878 ORTHO05D001737 6.0e-10 69.3 299 28.8
FAN18G4122 Fragaria x ananassa HOM05D001878 ORTHO05D001737 7.8e-10 68.9 299 28.8
Potri.003G083800 Populus trichocarpa HOM05D001878 ORTHO05D001737 7.8e-10 68.9 389 29.8
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 1.7e-09 67.8 318 27.0
Eucgr.E01658 Eucalyptus grandis HOM05D001878 ORTHO05D001737 1.7e-09 67.8 104 50.0
Lj8P277T40 Lonicera japonica HOM05D059923 ORTHO05D001737 1.7e-09 67.8 274 30.3
FAN04G0383 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.3e-09 67.4 299 29.8
Sabra03G0054300 Salix brachista HOM05D001878 ORTHO05D001737 2.3e-09 67.4 390 27.7
Aqoxy3G02646 Aquilegia oxysepala HOM05D001878 ORTHO05D001737 3.0e-09 67.0 315 34.0
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 3.0e-09 67.0 184 34.8
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 3.0e-09 67.0 326 30.1
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 3.9e-09 66.6 331 26.9
ECA240G4769 Erigeron canadensis HOM05D001878 ORTHO05D001737 3.9e-09 66.6 309 26.9
EL10Ac5g12265 Beta vulgaris HOM05D001878 ORTHO05D001737 5.1e-09 66.2 333 29.7
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 5.1e-09 66.2 321 29.3
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 6.6e-09 65.9 325 28.0
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 6.6e-09 65.9 320 29.4
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 8.6e-09 65.5 319 26.0
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 8.6e-09 65.5 325 31.7
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.1e-08 65.1 312 28.8
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 1.5e-08 64.7 313 27.5
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.5e-08 64.7 330 28.8
Sabra02G0150600 Salix brachista HOM05D001878 ORTHO05D001737 1.5e-08 64.7 127 33.1
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 1.5e-08 64.7 184 35.9
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 1.9e-08 64.3 317 29.7
FAN05G2379 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.5e-08 63.9 170 32.9
FAN13G0437 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.5e-08 63.9 309 29.1
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 2.5e-08 63.9 393 27.2
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 3.3e-08 63.5 331 28.7
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 3.3e-08 63.5 90 56.7
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 3.3e-08 63.5 327 30.0
RcHm_v2.0_Chr7g0205651 Rosa chinensis HOM05D001878 ORTHO05D001737 3.3e-08 63.5 318 31.1
Duzib205G1889 Durio zibethinus HOM05D001878 ORTHO05D001737 4.3e-08 63.2 354 32.8
Oeu024368.1 Olea europaea HOM05D001878 ORTHO05D001737 9.5e-08 62.0 319 27.3
CSS0023471 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 1.2e-07 61.6 99 53.5
CARHR223640 Cardamine hirsuta HOM05D001878 ORTHO05D001737 1.2e-07 61.6 349 26.9
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 1.6e-07 61.2 327 28.4
RcHm_v2.0_Chr7g0205761 Rosa chinensis HOM05D001878 ORTHO05D001737 2.1e-07 60.8 102 42.2
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 2.8e-07 60.5 312 28.5
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 3.6e-07 60.1 194 36.6
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 3.6e-07 60.1 179 35.2
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 3.6e-07 60.1 357 26.3
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 4.7e-07 59.7 157 43.9
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 4.7e-07 59.7 306 25.8
MD06G1046900 Malus domestica HOM05D001878 ORTHO05D001737 4.7e-07 59.7 226 35.0
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 6.2e-07 59.3 316 31.3
Ah.08g213030 Amaranthus hybridus HOM05D001878 ORTHO05D001737 1.1e-06 58.5 318 27.4
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 1.4e-06 58.2 316 27.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.8e-06 57.8 107 37.4
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 3.1e-06 57.0 342 25.7
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 3.1e-06 57.0 330 27.0
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 4.0e-06 56.6 338 25.1
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 5.2e-06 56.2 160 35.0
TWI15G0283 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 5.2e-06 56.2 126 38.1
ATR0665G280 Amborella trichopoda HOM05D001878 ORTHO05D001737 6.8e-06 55.8 84 45.2


User provided reference genes

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