Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 7.3e-308 1060.1 677 100.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.5e-276 956.1 675 93.0
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 6.2e-275 950.7 675 92.9
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.1e-254 880.9 678 87.8
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 9.8e-228 793.9 673 79.5
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.0e-224 783.9 675 77.9
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.3e-224 782.7 679 77.2
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.9e-223 779.6 677 77.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.5e-223 779.2 698 75.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 5.2e-221 771.5 681 76.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.0e-220 769.6 674 76.7
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.7e-219 766.5 686 76.2
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 9.2e-218 760.8 706 68.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.5e-217 758.4 683 75.8
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 8.6e-216 754.2 675 75.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.5e-215 752.7 677 79.5
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 9.5e-215 750.7 664 75.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 8.0e-214 747.7 680 72.6
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.4e-213 746.9 670 76.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 4.0e-213 745.3 674 75.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.3e-211 740.3 678 75.1
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 2.2e-211 739.6 578 84.6
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 4.9e-211 738.4 688 73.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 6.4e-211 738.0 671 77.6
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 6.4e-211 738.0 685 74.0
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.1e-210 735.3 686 73.5
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 5.4e-210 734.9 671 77.5
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.7e-209 732.6 675 72.7
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.7e-208 729.9 655 75.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.9e-208 728.8 663 73.2
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 5.0e-208 728.4 627 79.4
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.6e-208 728.0 650 76.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.1e-207 727.2 672 76.6
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 5.6e-207 724.9 656 75.3
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.2e-206 723.8 648 75.6
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.6e-206 723.4 658 77.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-206 723.0 648 76.1
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.1e-206 723.0 648 76.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.2e-206 721.5 660 74.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.2e-206 721.5 656 75.3
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 6.2e-206 721.5 684 75.6
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 8.0e-206 721.1 648 76.1
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 8.0e-206 721.1 648 76.1
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.4e-205 720.3 650 75.2
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.3e-205 719.5 680 72.9
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 3.1e-205 719.2 651 75.6
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.2e-205 718.4 663 74.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.6e-204 716.1 665 75.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.2e-203 713.0 667 76.3
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.1e-202 710.7 658 74.3
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.9e-202 709.9 732 72.3
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.1e-202 708.8 656 73.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.0e-201 706.4 662 68.7
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.5e-201 705.7 663 69.8
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.3e-200 703.7 671 71.4
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.7e-200 703.4 678 72.0
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.0e-200 702.6 661 72.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.9e-200 702.2 651 75.7
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 8.6e-200 701.0 653 74.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.5e-199 700.3 676 74.3
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.9e-199 699.9 677 71.9
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.9e-199 699.9 689 73.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.3e-199 698.0 680 71.5
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.6e-198 696.8 690 72.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.1e-198 696.4 675 73.8
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 4.7e-198 695.3 681 68.0
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.8e-197 693.3 690 72.0
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.2e-196 690.6 685 71.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-196 690.6 669 72.3
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.2e-196 690.6 677 73.3
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.4e-196 689.1 679 71.6
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.4e-196 688.7 668 71.6
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 5.8e-196 688.3 684 67.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 7.5e-196 688.0 684 67.0
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.7e-195 686.8 656 73.0
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.7e-195 685.6 569 77.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.9e-195 685.3 675 71.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.1e-194 684.1 677 70.8
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 5.4e-194 681.8 667 72.3
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.7e-193 679.5 722 62.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 4.6e-193 678.7 644 70.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 4.6e-193 678.7 677 67.5
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 6.0e-193 678.3 669 69.1
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 7.8e-193 677.9 669 71.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.0e-192 677.6 679 61.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.7e-192 676.8 674 69.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.7e-192 676.8 672 70.2
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.9e-192 675.6 680 66.3
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.1e-192 675.2 671 66.2
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.9e-191 673.3 652 72.4
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.5e-191 672.9 691 66.0
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 9.5e-191 671.0 681 70.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.2e-190 670.6 681 70.2
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-189 667.5 669 69.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.4e-189 667.2 681 63.7
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.8e-189 666.8 647 73.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.5e-188 663.7 701 68.5
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.8e-188 661.8 681 69.8
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.9e-187 659.4 571 68.3
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.4e-186 656.4 664 67.8
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.2e-185 654.1 622 74.3
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.3e-183 646.0 670 69.0
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.1e-181 641.0 630 61.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 4.0e-181 639.0 695 66.9
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.1e-173 614.4 577 74.7
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 9.0e-173 611.3 605 70.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 9.9e-172 607.8 652 66.7
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.2e-169 600.9 658 62.3
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 6.2e-166 588.6 673 64.5
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.4e-163 578.6 669 62.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.2e-162 575.9 528 78.6
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.9e-159 567.0 633 63.5
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.9e-157 558.5 604 64.1
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 8.4e-155 551.6 678 57.7
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.6e-145 520.8 671 53.8
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.8e-144 517.3 521 76.6
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.1e-141 508.1 671 53.9
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 3.1e-141 506.5 505 73.3
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 9.1e-141 505.0 525 72.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.2e-137 494.6 523 74.2
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.8e-133 480.7 622 54.7
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.5e-123 445.3 257 83.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.7e-120 435.6 511 60.3
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-119 433.0 525 60.6
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.3e-118 431.4 268 79.5
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.8e-109 401.0 308 70.8
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.6e-103 380.6 298 67.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.1e-101 373.2 486 67.7
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.6e-95 354.0 508 44.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.3e-86 325.1 477 53.0
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.9e-85 321.2 225 72.4
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-81 308.5 240 62.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 5.4e-77 293.1 290 55.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 5.6e-74 283.1 183 78.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.1e-72 278.9 259 60.6
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.2e-69 266.9 304 81.9
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 5.6e-66 256.5 302 51.0
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.8e-64 251.5 319 73.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.2e-62 244.6 171 69.0
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 9.6e-58 229.2 138 81.2
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-52 211.8 298 45.3
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.9e-50 204.9 289 84.1
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 8.1e-49 199.5 111 87.4
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-48 199.1 291 45.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.9e-48 196.4 233 52.8
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-46 192.2 111 84.7
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-43 181.8 123 66.7
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 5.3e-40 170.2 87 86.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 9.0e-40 169.5 167 56.3
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.2e-38 164.9 181 53.6
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-35 154.5 321 59.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.1e-32 144.4 574 33.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.5e-31 142.1 96 76.0
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 4.5e-31 140.6 176 47.7
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.9e-31 140.2 150 51.3
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.0e-30 139.4 93 76.3
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-30 138.7 105 68.6
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.5e-30 136.7 96 75.0
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 6.7e-27 126.7 525 33.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 4.8e-25 120.6 201 36.8
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.5e-21 108.2 69 73.9
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 7.4e-18 96.7 159 43.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 4.1e-16 90.9 68 64.7
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 7.0e-16 90.1 62 69.4
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.0e-16 90.1 66 69.7
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.9e-15 87.0 63 66.7
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 8.5e-14 83.2 64 62.5
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.1e-12 78.6 116 41.4
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.6e-12 77.8 52 73.1
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 6.7e-11 73.6 72 51.4
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 2.0e-10 72.0 84 50.0
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.6e-10 71.6 76 51.3
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.3e-09 69.3 59 57.6
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 4.8e-09 67.4 48 60.4
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 6.3e-09 67.0 49 63.3
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 8.2e-09 66.6 188 31.4
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.8e-08 65.5 68 55.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.4e-08 65.1 44 68.2
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 1.6e-07 62.4 59 57.6


User provided reference genes

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