Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G835.3 Capsicum annuum HOM05D000084 ORTHO05D006510 3.0e-93 345.1 171 100.0
CAN.G1774.11 Capsicum annuum HOM05D000084 ORTHO05D006510 4.6e-49 198.4 255 47.8
Sopen12g003180 Solanum pennellii HOM05D000084 ORTHO05D006510 9.9e-44 180.6 255 44.7
PGSC0003DMG400000305 Solanum tuberosum HOM05D000084 ORTHO05D006510 2.2e-43 179.5 255 44.3
Nitab4.5_0004391g0030 Nicotiana tabacum HOM05D000084 ORTHO05D006510 3.8e-43 178.7 256 45.3
Solyc12g007200.2 Solanum lycopersicum HOM05D000084 ORTHO05D006510 3.8e-43 178.7 255 44.3
Nitab4.5_0003733g0030 Nicotiana tabacum HOM05D000084 ORTHO05D006510 2.1e-41 172.9 256 44.5
Peaxi162Scf01363g00027 Petunia axillaris HOM05D000084 ORTHO05D006510 2.4e-34 149.4 256 40.2
Dinv41626 Davidia involucrata HOM05D000084 ORTHO05D006510 2.4e-26 122.9 75 76.0
Peaxi162Scf00231g00328 Petunia axillaris HOM05D000084 ORTHO05D006510 3.2e-26 122.5 73 79.5
HanXRQChr03g0061471 Helianthus annuus HOM05D000084 ORTHO05D006510 7.1e-26 121.3 72 77.8
Dinv36659 Davidia involucrata HOM05D000084 ORTHO05D006510 1.2e-25 120.6 73 76.7
Hund26226 Selenicereus undatus HOM05D000084 ORTHO05D006510 4.6e-25 118.6 71 74.6
ECA240G2238 Erigeron canadensis HOM05D000084 ORTHO05D006510 1.3e-24 117.1 72 72.2
GSVIVG01015360001 Vitis vinifera HOM05D000084 ORTHO05D006510 3.0e-24 115.9 71 74.6
Actinidia20390 Actinidia chinensis HOM05D000084 ORTHO05D006510 3.9e-24 115.5 73 71.2
AUR62010957 Chenopodium quinoa HOM05D000084 ORTHO05D006510 3.9e-24 115.5 75 70.7
AUR62021462 Chenopodium quinoa HOM05D000084 ORTHO05D006510 3.9e-24 115.5 75 70.7
Cc06_g09960 Coffea canephora HOM05D000084 ORTHO05D006510 5.1e-24 115.2 74 73.0
Oeu002250.1 Olea europaea HOM05D000084 ORTHO05D006510 5.1e-24 115.2 73 74.0
Sc18g0001300 Simmondsia chinensis HOM05D000084 ORTHO05D006510 5.1e-24 115.2 75 70.7
Rhsim01G0101100 Rhododendron simsii HOM05D000084 ORTHO05D006510 6.7e-24 114.8 73 72.6
CSS0015387 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D006510 1.1e-23 114.0 75 73.3
CSS0020134 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D006510 1.1e-23 114.0 75 73.3
Glyma.08G037300 Glycine max HOM05D000084 ORTHO05D006510 2.5e-23 112.8 74 68.9
Lj4A455G36 Lonicera japonica HOM05D000084 ORTHO05D006510 3.3e-23 112.5 72 73.6
Lj4C435G7 Lonicera japonica HOM05D000084 ORTHO05D006510 3.3e-23 112.5 72 73.6
vmacro20724 Vaccinium macrocarpon HOM05D000084 ORTHO05D006510 3.3e-23 112.5 77 66.2
Migut.J01141 Erythranthe guttata HOM05D000084 ORTHO05D006510 4.3e-23 112.1 71 73.2
SalBow6G1481 Salvia bowleyana HOM05D000084 ORTHO05D006510 4.3e-23 112.1 71 73.2
Medtr8g103240 Medicago truncatula HOM05D000084 ORTHO05D006510 5.6e-23 111.7 74 68.9
Hund09219 Selenicereus undatus HOM05D000084 ORTHO05D006510 5.6e-23 111.7 72 66.7
Ca_17326_v3 Cicer arietinum L. HOM05D000084 ORTHO05D006510 7.4e-23 111.3 71 70.4
Lsat_1_v5_gn_7_42060 Lactuca sativa HOM05D000084 ORTHO05D006510 1.3e-22 110.5 71 71.8
Ah.07g205480 Amaranthus hybridus HOM05D000084 ORTHO05D006510 1.6e-22 110.2 73 68.5
Ah.13g070400 Amaranthus hybridus HOM05D000084 ORTHO05D006510 2.1e-22 109.8 72 68.1
Psat7g015120 Pisum sativum HOM05D000084 ORTHO05D006510 2.1e-22 109.8 75 65.3
TPR.G23474 Trifolium pratense HOM05D000084 ORTHO05D006510 2.1e-22 109.8 79 64.6
arahy.Tifrunner.gnm1.ann1.HT6INV Arachis hypogaea HOM05D000084 ORTHO05D006510 2.8e-22 109.4 74 67.6
EL10Ac8g18438 Beta vulgaris HOM05D000084 ORTHO05D006510 2.8e-22 109.4 75 66.7
Phvul.002G312000 Phaseolus vulgaris HOM05D000084 ORTHO05D006510 2.8e-22 109.4 74 64.9
arahy.Tifrunner.gnm1.ann1.TVRM18 Arachis hypogaea HOM05D000084 ORTHO05D006510 3.7e-22 109.0 74 67.6
DCAR_006483 Daucus carota HOM05D000084 ORTHO05D006510 4.8e-22 108.6 72 69.4
Cfa003233 Carpinus fangiana HOM05D000084 ORTHO05D006510 6.2e-22 108.2 74 67.6
Nn3g18105 Nelumbo nucifera HOM05D000084 ORTHO05D006510 1.1e-21 107.5 76 61.8
SGA_v2.0_scaffold2G01213 Striga asiatica HOM05D000084 ORTHO05D006510 1.1e-21 107.5 72 68.1
TWI63G0910 Tripterygium wilfordii HOM05D000084 ORTHO05D006510 1.1e-21 107.5 74 67.6
Glyma.05G229800 Glycine max HOM05D000084 ORTHO05D006510 1.4e-21 107.1 74 66.2
TAR624G0760 Trochodendron aralioides HOM05D000084 ORTHO05D006510 1.4e-21 107.1 75 64.0
Ciclev10008156m.g Citrus clementina HOM05D000084 ORTHO05D006510 1.8e-21 106.7 72 65.3
Haze_25774 Corylus avellana HOM05D000084 ORTHO05D006510 1.8e-21 106.7 74 66.2
Lj4g0014422 Lotus japonicus HOM05D000084 ORTHO05D006510 2.4e-21 106.3 74 66.2
arahy.Tifrunner.gnm1.ann1.59QKRW Arachis hypogaea HOM05D000084 ORTHO05D006510 4.0e-21 105.5 74 66.2
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 5.3e-21 105.1 72 66.7
COL.COLO4_34820 Corchorus olitorius HOM05D000084 ORTHO05D006510 9.0e-21 104.4 72 63.9
VMungo0251G3104 Vigna mungo HOM05D000084 ORTHO05D006510 9.0e-21 104.4 74 63.5
Thecc.09G106800 Theobroma cacao HOM05D000084 ORTHO05D006510 1.2e-20 104.0 71 64.8
TWI34G0649 Tripterygium wilfordii HOM05D000084 ORTHO05D006510 1.2e-20 104.0 71 64.8
Manes.03G023300 Manihot esculenta HOM05D000084 ORTHO05D006510 2.6e-20 102.8 71 64.8
Prupe.7G226600 Prunus persica HOM05D000084 ORTHO05D006510 2.6e-20 102.8 71 64.8
CANSAT02G0004 Cannabis sativa HOM05D000084 ORTHO05D006510 3.4e-20 102.4 74 62.2
QL02p046152 Quercus lobata HOM05D000084 ORTHO05D006510 3.4e-20 102.4 74 63.5
AT4G28980 Arabidopsis thaliana HOM05D000084 ORTHO05D006510 4.5e-20 102.1 72 63.9
CiPaw.03G228900 Carya illinoinensis HOM05D000084 ORTHO05D006510 4.5e-20 102.1 74 62.2
Thhalv10025049m.g Eutrema salsugineum HOM05D000084 ORTHO05D006510 4.5e-20 102.1 75 61.3
MD15G1190500 Malus domestica HOM05D000084 ORTHO05D006510 4.5e-20 102.1 74 62.2
Duzib150G0885 Durio zibethinus HOM05D000084 ORTHO05D006510 5.8e-20 101.7 75 58.7
Sabra18G0071200 Salix brachista HOM05D000084 ORTHO05D006510 5.8e-20 101.7 72 62.5
BcaNung01340 Brassica carinata HOM05D000084 ORTHO05D006510 7.6e-20 101.3 72 63.9
Gohir.A07G005100 Gossypium hirsutum HOM05D000084 ORTHO05D006510 7.6e-20 101.3 75 58.7
Gorai.001G006600 Gossypium raimondii HOM05D000084 ORTHO05D006510 7.6e-20 101.3 75 58.7
TAR636G2755 Trochodendron aralioides HOM05D000084 ORTHO05D006510 1.0e-19 100.9 72 62.5
AL7G23480 Arabidopsis lyrata HOM05D000084 ORTHO05D006510 1.3e-19 100.5 75 61.3
ClCG11G002360 Citrullus lanatus HOM05D000084 ORTHO05D006510 1.3e-19 100.5 75 58.7
Lalb_Chr05g0223001 Lupinus albus HOM05D000084 ORTHO05D006510 1.3e-19 100.5 74 63.5
CARHR236710 Cardamine hirsuta HOM05D000084 ORTHO05D006510 2.2e-19 99.8 75 60.0
Atru.BG.25.p Acer truncatum HOM05D000084 ORTHO05D006510 2.9e-19 99.4 72 63.9
Gohir.D07G007000 Gossypium hirsutum HOM05D000084 ORTHO05D006510 2.9e-19 99.4 75 57.3
FAN26G1191 Fragaria x ananassa HOM05D000084 ORTHO05D006510 3.8e-19 99.0 71 62.0
MBI04_g04852_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D006510 3.8e-19 99.0 72 63.9
Potri.018G083300 Populus trichocarpa HOM05D000084 ORTHO05D006510 3.8e-19 99.0 72 61.1
Carub.0007s1166 Capsella rubella HOM05D000084 ORTHO05D006510 4.9e-19 98.6 75 60.0
Sed0025602 Sechium edule HOM05D000084 ORTHO05D006510 4.9e-19 98.6 74 59.5
FvH4_1g05460 Fragaria vesca HOM05D000084 ORTHO05D006510 6.5e-19 98.2 71 60.6
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 8.4e-19 97.8 72 62.5
MELO3C004567.2 Cucumis melo HOM05D000084 ORTHO05D006510 8.4e-19 97.8 75 57.3
CsaV3_2G002150 Cucumis sativus L. HOM05D000084 ORTHO05D006510 8.4e-19 97.8 75 58.7
FAN19G1244 Fragaria x ananassa HOM05D000084 ORTHO05D006510 8.4e-19 97.8 71 59.2
PGR142G1818 Punica granatum HOM05D000084 ORTHO05D006510 8.4e-19 97.8 75 57.3
BraA01t00847Z Brassica rapa HOM05D000084 ORTHO05D006510 1.1e-18 97.4 72 61.1
MD02G1062700 Malus domestica HOM05D000084 ORTHO05D006510 1.1e-18 97.4 74 59.5
FAN26G2733 Fragaria x ananassa HOM05D000084 ORTHO05D006510 1.4e-18 97.1 71 60.6
THA.LOC104814556 Tarenaya hassleriana HOM05D000084 ORTHO05D006510 1.4e-18 97.1 75 56.0
BcaC09g51674 Brassica carinata HOM05D000084 ORTHO05D006510 1.9e-18 96.7 89 55.1
Medtr6g087920 Medicago truncatula HOM05D000084 ORTHO05D006510 2.5e-18 96.3 77 57.1
Nn2g11673 Nelumbo nucifera HOM05D000084 ORTHO05D006510 2.5e-18 96.3 71 59.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 5.5e-18 95.1 72 59.7
Glyma.07G084300 Glycine max HOM05D000084 ORTHO05D006510 5.5e-18 95.1 74 56.8
TPR.G28416 Trifolium pratense HOM05D000084 ORTHO05D006510 5.5e-18 95.1 71 60.6
Eucgr.C01269 Eucalyptus grandis HOM05D000084 ORTHO05D006510 7.1e-18 94.7 74 56.8
FAN28G2964 Fragaria x ananassa HOM05D000084 ORTHO05D006510 7.1e-18 94.7 71 59.2
RcHm_v2.0_Chr2g0091141 Rosa chinensis HOM05D000084 ORTHO05D006510 9.3e-18 94.4 71 57.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.2e-17 94.0 72 58.3
FAN23G1577 Fragaria x ananassa HOM05D002640 ORTHO05D006510 1.2e-17 94.0 71 59.2
Sp7g26920 Schrenkiella parvula HOM05D000084 ORTHO05D006510 1.2e-17 94.0 72 58.3
Cpa.g.sc23.77 Carica papaya HOM05D000084 ORTHO05D006510 1.6e-17 93.6 75 54.7
Glyma.09G192600 Glycine max HOM05D000084 ORTHO05D006510 2.7e-17 92.8 67 61.2
VMungo0464G0290 Vigna mungo HOM05D000084 ORTHO05D006510 4.6e-17 92.0 75 57.3
Ca_25542_v3 Cicer arietinum L. HOM05D000084 ORTHO05D006510 7.9e-17 91.3 71 56.3
Phvul.004G165900 Phaseolus vulgaris HOM05D000084 ORTHO05D006510 1.8e-16 90.1 67 61.2
Zm00001eb278130 Zea mays HOM05D000084 ORTHO05D006510 1.8e-16 90.1 75 52.0
BcaNung00442 Brassica carinata HOM05D000084 ORTHO05D006510 5.1e-16 88.6 63 61.9
Os06g0334400 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D006510 5.1e-16 88.6 75 53.3
HPP92_005268 Vanilla planifolia HOM05D000346 ORTHO05D006510 5.1e-16 88.6 75 54.7
Aa31LG2G21310 Aethionema arabicum HOM05D000084 ORTHO05D006510 8.7e-16 87.8 79 54.4
CAN.G841.24 Capsicum annuum HOM05D000084 ORTHO05D115396 8.7e-16 87.8 95 57.9
unitig_27.g24906 Utricularia gibba HOM05D000084 ORTHO05D006510 1.5e-15 87.0 74 58.1
ATR0315G137 Amborella trichopoda HOM05D000084 ORTHO05D006510 2.8e-14 82.8 131 37.4
PSO339G3930 Papaver somniferum HOM05D000084 ORTHO05D006510 2.8e-14 82.8 71 53.5
Lalb_Chr24g0397421 Lupinus albus HOM05D000084 ORTHO05D006510 3.7e-14 82.4 58 63.8
Aqoxy7G01577 Aquilegia oxysepala HOM05D000084 ORTHO05D006510 1.1e-13 80.9 73 52.1
PSO801G0738 Papaver somniferum HOM05D000084 ORTHO05D006510 2.4e-13 79.7 71 49.3
SGA_v2.0_scaffold247G44836 Striga asiatica HOM05D046245 ORTHO05D401137 2.4e-13 79.7 70 58.6
Psat1g041480 Pisum sativum HOM05D000084 ORTHO05D006510 1.2e-12 77.4 55 61.8
arahy.Tifrunner.gnm1.ann1.MYD2LQ Arachis hypogaea HOM05D000084 ORTHO05D006510 3.4e-12 75.9 60 50.0
arahy.Tifrunner.gnm1.ann1.Z2KR9B Arachis hypogaea HOM05D000084 ORTHO05D006510 3.8e-11 72.4 60 48.3
CiPaw.04G162400 Carya illinoinensis HOM05D000084 ORTHO05D006510 4.2e-10 68.9 55 58.2
CDE05G0013 Ceratophyllum demersum HOM05D000084 ORTHO05D006510 4.2e-10 68.9 64 46.9


User provided reference genes

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