Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 3.2e-37 157.9 79 100.0
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.1e-21 106.3 142 45.8
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 5.4e-21 104.0 126 50.8
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.2e-20 102.8 126 50.0
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 6.0e-20 100.5 126 49.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.0e-19 98.2 126 48.4
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 5.6e-18 94.0 133 42.9
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 7.3e-18 93.6 133 42.1
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 9.6e-18 93.2 133 42.9
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.3e-17 92.8 133 42.1
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.6e-17 92.4 133 42.1
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.6e-17 92.4 133 42.1
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 2.1e-17 92.0 137 40.9
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 2.1e-17 92.0 133 41.4
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 2.1e-17 92.0 133 42.9
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.8e-17 91.7 133 42.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 2.8e-17 91.7 133 41.4
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 3.6e-17 91.3 133 41.4
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 4.8e-17 90.9 131 41.2
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 4.8e-17 90.9 132 40.9
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.2e-17 90.5 133 41.4
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.2e-17 90.5 128 42.2
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.2e-17 90.5 128 42.2
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 6.2e-17 90.5 128 42.2
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.1e-16 89.7 129 43.4
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.1e-16 89.7 133 41.4
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.1e-16 89.7 133 40.6
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.4e-16 89.4 135 42.2
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.8e-16 89.0 131 40.5
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 3.1e-16 88.2 133 42.1
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 40.6
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 39.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 40.6
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 40.6
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 40.6
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 5.3e-16 87.4 131 40.5
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 40.6
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 5.3e-16 87.4 133 41.4
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 9.0e-16 86.7 133 39.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 9.0e-16 86.7 135 42.2
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.2e-15 86.3 133 41.4
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.5e-15 85.9 135 40.7
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.5e-15 85.9 135 40.7
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.0e-15 85.5 133 39.8
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.0e-15 85.5 133 39.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 2.6e-15 85.1 133 39.8
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.6e-15 85.1 135 40.7
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 2.6e-15 85.1 130 37.7
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 2.6e-15 85.1 133 39.8
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 4.5e-15 84.3 133 39.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 5.8e-15 84.0 133 39.1
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 7.6e-15 83.6 133 39.1
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 9.9e-15 83.2 133 39.8
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.3e-14 82.8 133 39.1
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.2e-14 82.0 133 38.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 2.2e-14 82.0 130 38.5
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 2.2e-14 82.0 54 74.1
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.9e-14 81.6 136 36.8
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 2.9e-14 81.6 133 37.6
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.9e-14 81.6 133 37.6
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 2.9e-14 81.6 131 39.7
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.9e-14 81.6 134 40.3
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 2.9e-14 81.6 128 40.6
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 4.9e-14 80.9 134 40.3
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 8.4e-14 80.1 133 36.1
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.1e-13 79.7 133 38.3
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.9e-13 79.0 75 50.7
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.4e-13 78.6 53 67.9
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 3.2e-13 78.2 128 38.3
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 3.2e-13 78.2 133 36.1
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 3.2e-13 78.2 133 37.6
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 3.2e-13 78.2 53 67.9
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 5.4e-13 77.4 130 36.2
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.2e-12 76.3 131 37.4
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.6e-12 75.9 133 36.1
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 2.7e-12 75.1 128 39.1
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.7e-12 75.1 131 39.7
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.7e-12 75.1 133 37.6
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.7e-12 75.1 134 36.6
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 3.5e-12 74.7 131 35.9
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.8e-11 72.4 133 36.8
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 1.8e-11 72.4 126 38.1
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 5.1e-11 70.9 133 33.8
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 6.7e-11 70.5 133 33.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 8.7e-11 70.1 47 72.3
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 2.5e-10 68.6 133 33.1
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 2.5e-10 68.6 133 33.1
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 2.5e-10 68.6 127 37.8
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.3e-10 68.2 131 32.1
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 5.6e-10 67.4 133 33.1
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.3e-09 66.2 117 37.6
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.1e-09 65.5 134 33.6
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.8e-08 62.4 128 32.8
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.5e-07 59.3 117 34.2
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.6e-07 58.5 128 31.2


User provided reference genes

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