Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G827.4 Capsicum annuum HOM05D001502 ORTHO05D002950 5.8e-62 240.7 124 100.0
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 5.0e-37 157.9 103 81.6
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 4.2e-36 154.8 103 79.6
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 1.6e-35 152.9 104 76.9
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 4.7e-35 151.4 103 77.7
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 7.9e-35 150.6 92 84.8
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 7.9e-35 150.6 92 84.8
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.0e-34 150.2 103 77.7
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 6.3e-32 141.0 92 78.3
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 6.3e-32 141.0 92 78.3
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.4e-31 139.8 92 78.3
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 3.1e-31 138.7 92 77.2
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 2.9e-29 132.1 92 78.3
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 2.7e-27 125.6 90 72.2
CAN.G59.25 Capsicum annuum HOM05D001502 ORTHO05D002950 1.1e-23 113.6 96 64.6
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-22 109.4 104 58.7
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-22 109.4 104 58.7
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 1.3e-21 106.7 104 57.7
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 2.2e-21 105.9 104 53.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 8.5e-21 104.0 106 53.8
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 8.5e-21 104.0 104 54.8
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 2.5e-20 102.4 104 55.8
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.2e-19 100.1 104 54.8
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.2e-19 100.1 104 54.8
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.2e-19 100.1 104 54.8
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.6e-19 99.8 92 58.7
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.7e-19 99.0 92 56.5
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.6e-19 98.6 101 54.5
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.6e-19 98.6 101 54.5
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.6e-19 98.6 101 54.5
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 4.7e-19 98.2 91 59.3
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 6.1e-19 97.8 93 59.1
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 6.1e-19 97.8 105 53.3
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 8.0e-19 97.4 100 56.0
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.0e-18 97.1 104 54.8
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.0e-18 97.1 100 56.0
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 1.0e-18 97.1 91 58.2
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 2.3e-18 95.9 95 54.7
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 3.0e-18 95.5 92 55.4
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 3.0e-18 95.5 92 58.7
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 5.2e-18 94.7 91 59.3
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 6.8e-18 94.4 91 57.1
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 6.8e-18 94.4 92 57.6
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 8.8e-18 94.0 104 51.0
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.5e-17 93.2 91 53.8
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 2.0e-17 92.8 100 53.0
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 3.4e-17 92.0 93 52.7
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 4.4e-17 91.7 91 59.3
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 4.4e-17 91.7 104 51.9
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 7.5e-17 90.9 104 50.0
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 1.7e-16 89.7 91 58.2
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 2.2e-16 89.4 93 54.8
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.2e-16 89.4 90 53.3
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 2.2e-16 89.4 92 51.1
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 4.8e-16 88.2 93 52.7
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 4.8e-16 88.2 90 55.6
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 6.3e-16 87.8 100 53.0
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 6.3e-16 87.8 103 48.5
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 6.3e-16 87.8 92 53.3
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 6.3e-16 87.8 92 53.3
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 8.3e-16 87.4 92 51.1
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 1.1e-15 87.0 103 48.5
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 1.1e-15 87.0 92 52.2
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 1.4e-15 86.7 93 51.6
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 1.4e-15 86.7 96 53.1
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 1.4e-15 86.7 103 52.4
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 1.4e-15 86.7 93 51.6
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 1.8e-15 86.3 93 51.6
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 1.8e-15 86.3 90 53.3
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 2.4e-15 85.9 95 53.7
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.4e-15 85.9 106 49.1
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 3.1e-15 85.5 103 47.6
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 3.1e-15 85.5 92 51.1
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 4.1e-15 85.1 90 52.2
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 5.4e-15 84.7 93 54.8
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 7.0e-15 84.3 94 51.1
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 9.1e-15 84.0 92 48.9
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 2.0e-14 82.8 92 56.5
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.0e-14 82.8 104 46.2
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.0e-14 82.8 91 50.5
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 2.0e-14 82.8 92 52.2
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.7e-14 82.4 104 46.2
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 2.7e-14 82.4 92 50.0
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 2.7e-14 82.4 80 60.0
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 4.5e-14 81.6 92 50.0
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 4.5e-14 81.6 94 51.1
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 4.5e-14 81.6 91 50.5
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 7.7e-14 80.9 92 50.0
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 7.7e-14 80.9 91 50.5
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 7.7e-14 80.9 91 47.3
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 7.7e-14 80.9 104 47.1
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 2.2e-13 79.3 92 47.8
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 2.2e-13 79.3 92 50.0
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 2.9e-13 79.0 91 49.5
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 2.9e-13 79.0 92 50.0
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 2.9e-13 79.0 106 48.1
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 2.9e-13 79.0 93 47.3
VMungo1215G0294 Vigna mungo HOM05D001502 ORTHO05D002950 2.9e-13 79.0 93 48.4
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 8.5e-13 77.4 92 48.9
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 8.5e-13 77.4 90 46.7
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 1.5e-12 76.6 91 48.4
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 1.5e-12 76.6 91 50.5
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 1.9e-12 76.3 93 47.3
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 2.5e-12 75.9 92 46.7
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.5e-12 75.9 90 48.9
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 2.5e-12 75.9 93 46.2
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.2e-12 75.5 91 50.5
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.5e-12 74.7 91 50.5
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 5.5e-12 74.7 93 50.5
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 7.2e-12 74.3 103 48.5
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 9.4e-12 73.9 93 46.2
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.2e-11 73.6 104 47.1
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.2e-11 73.6 91 49.5
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 1.6e-11 73.2 92 47.8
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 2.7e-11 72.4 100 44.0
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 2.7e-11 72.4 91 48.4
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.7e-11 72.4 91 49.5
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 2.7e-11 72.4 94 45.7
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 4.7e-11 71.6 91 46.2
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 4.7e-11 71.6 107 43.9
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 1.0e-10 70.5 92 44.6
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 1.0e-10 70.5 123 37.4
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 1.4e-10 70.1 67 52.2
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.8e-10 69.7 93 45.2
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 3.0e-10 68.9 66 57.6
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 4.0e-10 68.6 82 47.6
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 5.2e-10 68.2 92 45.7
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 6.8e-10 67.8 91 45.1
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 6.8e-10 67.8 90 43.3
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 8.8e-10 67.4 92 45.7
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.5e-09 66.6 90 46.7
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 2.6e-09 65.9 82 45.1
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 2.6e-09 65.9 82 45.1
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 3.4e-09 65.5 67 52.2
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 3.4e-09 65.5 106 43.4
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 4.4e-09 65.1 92 42.4
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 1.7e-08 63.2 100 41.0
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 2.2e-08 62.8 93 37.6
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 2.8e-08 62.4 100 42.0
Zm00001eb341940 Zea mays HOM05D001502 ORTHO05D002950 2.8e-08 62.4 65 53.8
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 4.9e-08 61.6 67 50.7
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 4.9e-08 61.6 67 50.7
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 1.1e-07 60.5 67 49.3
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 5.4e-07 58.2 54 61.1
Glyma.19G131300 Glycine max HOM05D001502 ORTHO05D002950 9.2e-07 57.4 63 50.8
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 9.2e-07 57.4 52 57.7
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 2.7e-06 55.8 102 36.3
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 7.7e-06 54.3 67 44.8


User provided reference genes

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