Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 0.0e+00 1158.7 599 100.0
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 1083.6 596 94.3
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 1079.3 596 94.1
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 1.6e-303 1045.4 613 88.1
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.7e-292 1008.8 596 87.6
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 8.9e-257 890.2 592 79.9
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 1.6e-237 826.2 600 71.5
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 5.1e-236 821.2 607 69.0
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 4.4e-232 808.1 624 67.9
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 1.1e-230 803.5 612 67.8
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 1.4e-230 803.1 607 67.4
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 2.7e-229 798.9 607 68.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 1.3e-228 796.6 600 67.7
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 3.0e-228 795.4 607 67.7
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 1.9e-227 792.7 600 65.8
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 2.5e-227 792.3 607 67.1
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 9.6e-227 790.4 607 67.4
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 2.8e-226 788.9 607 66.1
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 6.2e-226 787.7 607 67.4
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.7e-223 779.6 606 66.2
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-222 776.9 596 66.6
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.1e-222 776.9 584 68.2
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.7e-221 772.3 607 65.2
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.7e-221 772.3 607 65.2
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 3.5e-221 771.9 607 65.6
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 3.5e-221 771.9 607 65.4
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 4.6e-221 771.5 607 65.1
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 1.3e-220 770.0 607 65.9
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 7.3e-219 764.2 606 65.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 1.6e-218 763.1 607 65.4
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 2.8e-218 762.3 596 66.8
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 2.8e-218 762.3 607 65.6
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 5.3e-217 758.1 608 63.8
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 2.0e-216 756.1 607 65.2
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.0e-216 756.1 607 65.2
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.6e-216 755.7 607 64.7
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.6e-216 755.7 607 65.1
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-215 752.3 607 64.7
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 3.8e-215 751.9 607 65.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 3.8e-215 751.9 608 65.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 7.1e-214 747.7 607 63.8
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 2.7e-213 745.7 605 64.3
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 7.8e-213 744.2 609 64.4
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 6.6e-212 741.1 607 64.3
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 1.5e-211 740.0 607 63.4
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 3.3e-211 738.8 607 65.2
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 3.3e-211 738.8 629 62.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 2.8e-210 735.7 609 63.9
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 8.1e-210 734.2 609 63.7
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 1.1e-209 733.8 607 63.6
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.1e-209 733.8 609 64.4
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 1.4e-209 733.4 607 64.1
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 3.1e-209 732.3 607 64.4
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 9.0e-209 730.7 609 63.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 1.5e-208 729.9 643 62.4
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 7.9e-205 717.6 607 60.8
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.0e-204 717.2 607 61.3
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 2.3e-204 716.1 610 60.8
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 5.1e-204 714.9 607 61.4
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 8.7e-204 714.1 606 61.6
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 1.9e-203 713.0 605 61.0
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 2.5e-203 712.6 608 61.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 2.8e-202 709.1 624 60.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 8.1e-202 707.6 606 61.4
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 8.1e-202 707.6 609 60.4
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 1.1e-195 687.2 603 60.7
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 3.3e-195 685.6 607 61.1
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 4.3e-195 685.3 602 61.3
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 6.2e-194 681.4 602 60.3
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 2.0e-192 676.4 601 60.2
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 2.6e-192 676.0 602 59.5
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 1.2e-189 667.2 596 58.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 1.6e-189 666.8 737 50.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 3.5e-189 665.6 604 58.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 4.3e-187 658.7 605 58.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 4.3e-187 658.7 605 58.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 1.6e-186 656.8 607 58.5
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 8.2e-186 654.4 611 58.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 5.0e-183 645.2 602 57.8
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 6.3e-178 628.2 607 57.3
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.6e-173 613.6 596 53.4
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 3.7e-170 602.4 606 54.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 1.9e-166 590.1 466 65.5
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.6e-165 585.9 609 53.5
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.7e-155 552.0 563 52.4
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 4.7e-133 479.2 466 53.2
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.5e-118 431.0 623 40.0
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.8e-116 424.1 402 59.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.4e-113 414.5 606 43.7
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 2.4e-113 413.7 623 40.1
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-112 411.0 423 54.6
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 1.3e-111 407.9 626 39.3
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-109 400.2 300 70.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 1.3e-106 391.3 611 38.8
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 5.6e-102 375.9 291 68.0
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.3e-102 375.6 349 57.6
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.1e-94 351.7 310 61.0
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.8e-82 310.1 299 54.8
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 3.9e-79 300.1 578 33.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.1e-78 298.5 298 56.7
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.3e-74 285.0 263 59.3
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.9e-74 283.9 300 51.3
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-56 224.9 351 40.5
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.8e-55 221.5 193 58.0
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-51 208.8 224 52.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-51 208.8 224 52.7
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 2.7e-48 197.6 285 41.8
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-46 192.2 168 57.7
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 1.7e-45 188.3 164 61.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 3.1e-44 184.1 343 37.0
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 5.3e-44 183.3 141 66.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.6e-40 170.6 160 52.5
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.7e-37 161.8 134 62.7
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-34 152.1 108 68.5
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.6e-32 145.2 121 62.8
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 8.8e-31 139.4 167 46.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-26 125.9 95 65.3
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 9.8e-22 109.4 80 61.2
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.4e-20 105.5 79 67.1
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.0e-18 99.4 110 50.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.8e-16 91.3 70 62.9
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 1.9e-12 78.6 79 49.4
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.4e-12 78.2 79 53.2
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 3.2e-12 77.8 61 67.2
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.6e-09 67.0 71 49.3
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 3.1e-07 61.2 41 68.3
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 4.4e-06 57.4 55 52.7


User provided reference genes

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