Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G8.32 Capsicum annuum HOM05D002496 ORTHO05D002787 8.5e-91 337.0 176 100.0
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 8.6e-59 230.7 174 74.7
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-57 226.9 155 81.9
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-56 222.2 155 80.6
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 8.9e-56 220.7 155 80.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 1.2e-55 220.3 155 79.4
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-55 218.8 155 80.0
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 3.4e-55 218.8 155 78.1
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 7.5e-55 217.6 155 78.7
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 9.8e-55 217.2 155 78.7
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 9.8e-55 217.2 155 79.4
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 2.9e-54 215.7 159 74.8
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 2.9e-54 215.7 155 78.1
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 6.4e-54 214.5 162 74.1
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 8.3e-54 214.2 160 76.9
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-53 213.4 155 78.7
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-53 212.6 151 79.5
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-53 212.2 155 78.1
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-53 211.5 155 78.1
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-52 209.9 155 76.1
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-51 207.2 169 68.6
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-51 206.8 159 72.3
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-51 206.8 155 76.8
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-51 206.5 151 75.5
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 1.7e-51 206.5 155 72.9
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-51 206.1 155 76.8
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-51 206.1 150 79.3
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.1e-50 203.8 155 69.0
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 5.6e-50 201.4 152 76.3
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 1.6e-49 199.9 155 68.4
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.3e-48 196.1 155 68.4
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 9.8e-47 190.7 150 70.0
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 8.3e-46 187.6 152 66.4
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 1.1e-45 187.2 143 74.1
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-45 186.0 135 76.3
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 2.4e-45 186.0 155 66.5
CAN.G134.142 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-45 185.3 142 75.4
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 4.1e-45 185.3 171 63.2
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 4.1e-45 185.3 152 68.4
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.2e-44 183.7 155 63.9
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 7.8e-44 181.0 141 73.8
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 1.0e-43 180.6 155 67.1
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-43 180.3 162 66.0
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.3e-43 180.3 155 65.2
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 1.7e-43 179.9 153 68.6
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 2.3e-43 179.5 171 60.2
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-43 179.1 141 73.0
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 3.0e-43 179.1 168 60.7
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.9e-43 178.7 153 68.0
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 5.0e-43 178.3 180 58.3
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 6.6e-43 177.9 164 62.8
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 6.6e-43 177.9 170 62.9
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 8.6e-43 177.6 130 76.9
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 8.6e-43 177.6 172 59.9
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 5.6e-42 174.9 155 63.2
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 7.3e-42 174.5 171 60.2
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 7.3e-42 174.5 171 60.8
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 9.5e-42 174.1 172 59.3
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 9.5e-42 174.1 172 58.7
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-41 173.7 165 64.8
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-41 173.3 130 76.2
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 3.6e-41 172.2 171 60.2
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 3.6e-41 172.2 171 60.2
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.2e-41 171.4 170 58.8
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 6.2e-41 171.4 170 58.8
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.4e-40 170.2 156 65.4
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 3.1e-40 169.1 139 66.2
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 5.2e-40 168.3 171 57.3
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 8.9e-40 167.5 156 62.2
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.2e-39 167.2 156 61.5
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.2e-39 167.2 177 54.8
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.2e-39 167.2 170 57.6
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.5e-39 166.8 171 57.9
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 1.5e-39 166.8 170 58.8
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 1.5e-39 166.8 152 63.2
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 2.0e-39 166.4 171 59.6
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 2.6e-39 166.0 170 57.1
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 3.4e-39 165.6 171 58.5
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 3.4e-39 165.6 170 57.6
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 3.4e-39 165.6 170 59.4
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 3.4e-39 165.6 170 59.4
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 4.4e-39 165.2 171 57.3
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 4.4e-39 165.2 171 57.3
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 4.4e-39 165.2 171 58.5
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 5.8e-39 164.9 166 60.2
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 9.9e-39 164.1 155 62.6
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 9.9e-39 164.1 175 55.4
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 1.3e-38 163.7 175 55.4
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 2.9e-38 162.5 172 58.1
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 6.4e-38 161.4 168 57.7
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 6.4e-38 161.4 168 57.7
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 6.4e-38 161.4 167 57.5
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 1.4e-37 160.2 168 57.1
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-37 159.8 114 78.9
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 1.9e-37 159.8 159 57.2
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 4.1e-37 158.7 169 58.0
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 4.1e-37 158.7 170 57.1
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 4.1e-37 158.7 171 55.0
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 9.2e-37 157.5 173 56.6
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.2e-36 157.1 168 56.0
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.2e-36 157.1 167 56.9
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.6e-36 156.8 167 56.9
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 2.1e-36 156.4 169 57.4
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.1e-36 156.4 165 55.8
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.1e-36 156.4 165 56.4
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 2.7e-36 156.0 164 57.3
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 4.6e-36 155.2 165 55.8
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 7.8e-36 154.5 168 55.4
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 7.8e-36 154.5 168 57.1
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 1.7e-35 153.3 168 54.8
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 1.7e-35 153.3 168 54.8
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 1.7e-35 153.3 169 56.8
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 2.3e-35 152.9 166 56.0
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 5.1e-35 151.8 169 56.2
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 1.1e-34 150.6 168 53.6
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 1.1e-34 150.6 168 53.6
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-34 150.6 157 60.5
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 1.9e-34 149.8 175 51.4
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.9e-34 149.8 167 53.9
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.5e-34 149.4 172 54.7
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 3.3e-34 149.1 170 55.9
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 5.6e-34 148.3 173 53.8
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.6e-33 146.7 176 51.7
CAN.G309.148 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-33 145.6 113 74.3
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 8.1e-33 144.4 167 52.1
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-32 144.1 163 55.8
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 2.4e-32 142.9 171 52.6
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 5.2e-32 141.7 164 53.7
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 5.2e-32 141.7 159 57.2
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 5.2e-32 141.7 177 50.8
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 8.9e-32 141.0 159 55.3
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-31 140.6 97 80.4
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.5e-31 140.2 177 50.3
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.4e-29 132.9 167 49.7
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-29 131.7 155 52.9
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 9.2e-29 131.0 158 53.2
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 9.2e-29 131.0 153 54.9
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 2.1e-28 129.8 155 53.5
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-28 129.4 141 58.2
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 3.5e-28 129.0 144 61.1
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 1.1e-26 124.0 176 48.3
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 1.2e-25 120.6 173 45.1
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-25 119.0 133 55.6
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 2.4e-24 116.3 174 47.1
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 4.0e-24 115.5 84 73.8
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 2.9e-22 109.4 171 43.9
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.9e-21 106.7 181 41.4
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 2.4e-21 106.3 167 43.7
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 9.3e-21 104.4 81 74.1
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 2.1e-20 103.2 104 57.7
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.3e-19 100.5 161 46.0
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 3.0e-19 99.4 167 42.5
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 6.6e-19 98.2 158 43.7
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.8e-17 92.0 100 56.0
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 3.1e-16 89.4 71 71.8
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.4e-13 80.5 100 53.0
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 6.2e-09 65.1 56 67.9
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 4.5e-07 58.9 164 33.5


User provided reference genes

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