Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 2.3e-26 121.3 55 100.0
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.3e-21 105.5 55 87.3
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.3e-21 105.5 55 87.3
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.3e-21 105.5 55 87.3
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 1.3e-21 105.5 55 85.5
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.7e-21 105.1 54 87.0
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 3.8e-21 104.0 55 85.5
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 3.8e-21 104.0 55 85.5
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 6.5e-21 103.2 55 85.5
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 8.4e-21 102.8 55 85.5
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.4e-21 102.8 55 85.5
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 8.4e-21 102.8 55 85.5
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.1e-20 102.4 55 83.6
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 1.3e-18 95.5 55 80.0
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.7e-18 93.2 55 78.2
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 2.5e-17 91.3 49 83.7
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 4.3e-17 90.5 52 80.8
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 7.4e-17 89.7 55 74.5
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 7.4e-17 89.7 50 80.0
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 6.2e-16 86.7 55 74.5
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 6.9e-15 83.2 54 74.1
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 9.0e-15 82.8 47 78.7
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 1.5e-14 82.0 53 71.7
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 46 76.1
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 7.6e-14 79.7 49 77.6
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 3.8e-13 77.4 44 79.5
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 6.5e-13 76.6 55 69.1
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.5e-13 76.6 55 67.3
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 8.4e-13 76.3 55 69.1
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-12 75.9 55 67.3
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.4e-12 75.5 55 63.6
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 2.5e-12 74.7 55 67.3
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 65.5
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 65.5
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 65.5
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 65.5
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 65.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 5.5e-12 73.6 55 67.3
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 5.5e-12 73.6 55 67.3
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.5e-12 73.6 55 67.3
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 7.1e-12 73.2 55 65.5
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 9.3e-12 72.8 55 63.6
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 9.3e-12 72.8 55 63.6
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 1.2e-11 72.4 55 65.5
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 1.2e-11 72.4 55 63.6
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 1.6e-11 72.0 55 63.6
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 1.6e-11 72.0 56 67.9
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 2.7e-11 71.2 38 81.6
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 2.7e-11 71.2 55 63.6
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 2.7e-11 71.2 55 65.5
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 3.5e-11 70.9 39 76.9
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 6.1e-11 70.1 52 65.4
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 6.1e-11 70.1 48 66.7
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 6.1e-11 70.1 55 63.6
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.0e-10 69.3 55 61.8
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 1.0e-10 69.3 55 61.8
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.3e-10 68.9 55 61.8
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.3e-10 68.9 59 57.6
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 1.8e-10 68.6 50 66.0
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.8e-10 68.6 51 64.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.0e-10 67.8 55 61.8
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 8.7e-10 66.2 49 67.3
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.1e-09 65.9 55 60.0
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 1.1e-09 65.9 50 64.0
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 1.9e-09 65.1 54 57.4
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-09 63.5 54 57.4
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-09 63.5 54 57.4
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.4e-09 63.2 54 55.6
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.4e-09 63.2 54 55.6
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-07 59.3 48 58.3
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.4e-07 58.9 49 57.1
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.4e-07 58.9 49 57.1
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.4e-07 58.9 49 57.1
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.4e-07 58.9 49 57.1
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.4e-07 58.9 49 57.1
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 3.1e-07 57.8 38 71.1
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-07 56.6 45 60.0
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 9.0e-07 56.2 47 57.4
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 5.9e-06 53.5 26 84.6


User provided reference genes

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