Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 0.0e+00 1203.0 586 100.0
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 0.0e+00 1084.7 583 90.9
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 2.3e-286 988.4 538 90.1
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 1.3e-273 946.0 601 77.4
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.3e-270 935.3 521 87.3
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.1e-267 926.4 596 75.5
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 2.1e-266 922.2 597 75.7
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 4.6e-266 921.0 598 75.6
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.3e-265 919.5 595 75.1
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 3.3e-264 914.8 634 72.2
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 4.3e-264 914.4 595 74.5
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.6e-263 912.5 599 74.3
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 6.2e-263 910.6 588 75.5
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 1.2e-261 906.4 614 72.8
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.7e-260 902.5 590 74.6
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 8.4e-260 900.2 595 73.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.4e-259 899.4 597 74.7
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 3.2e-259 898.3 598 74.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 9.3e-259 896.7 595 73.4
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.2e-258 896.3 596 74.0
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 1.6e-258 896.0 595 72.8
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 2.1e-258 895.6 672 68.6
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 5.1e-257 891.0 595 72.8
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 6.6e-257 890.6 501 87.2
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 3.3e-256 888.3 595 72.6
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 3.3e-256 888.3 595 72.4
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.6e-255 885.9 595 73.1
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 3.1e-254 881.7 595 72.9
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.9e-254 880.6 595 72.4
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 3.4e-253 878.2 595 70.9
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 4.4e-253 877.9 595 72.6
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.9e-253 876.7 604 71.2
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 8.4e-252 873.6 595 70.9
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 5.4e-251 870.9 593 72.7
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.1e-250 869.0 595 70.9
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 3.5e-250 868.2 598 71.9
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 4.6e-250 867.8 595 70.6
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.3e-249 865.5 596 69.8
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.1e-248 863.2 595 70.8
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 1.9e-248 862.4 579 72.2
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 2.5e-248 862.1 573 73.5
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.3e-247 859.8 596 70.6
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.3e-247 859.8 597 71.4
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 8.1e-247 857.1 595 70.8
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 9.0e-246 853.6 558 76.2
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 2.6e-245 852.0 583 71.5
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 3.4e-245 851.7 586 71.5
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 4.9e-244 847.8 639 66.2
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.3e-241 839.7 595 68.2
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 1.3e-241 839.7 595 68.7
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 2.3e-241 839.0 595 68.6
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.3e-239 833.2 535 75.7
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 8.1e-239 830.5 595 68.4
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 1.4e-238 829.7 639 66.5
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.3e-238 827.8 597 68.2
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 5.3e-238 827.8 597 68.3
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 1.0e-236 823.5 597 68.0
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 1.4e-235 819.7 595 67.1
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.9e-235 819.3 595 67.1
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.5e-232 809.7 597 66.8
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 2.4e-230 802.4 597 67.3
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 4.1e-230 801.6 588 66.7
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 7.6e-229 797.3 648 63.1
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 2.9e-228 795.4 599 65.4
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 5.5e-227 791.2 551 71.3
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.7e-226 788.9 597 66.0
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.9e-226 787.3 599 66.6
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.1e-224 783.5 597 65.5
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.9e-224 782.7 595 65.9
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 2.6e-221 772.3 589 63.7
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 5.0e-220 768.1 582 67.2
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 1.1e-219 766.9 587 62.7
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.6e-218 763.1 538 70.4
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 3.3e-216 755.4 610 65.4
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 4.8e-215 751.5 522 72.6
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 6.3e-215 751.1 588 63.4
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 1.8e-214 749.6 587 62.4
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 9.1e-214 747.3 593 61.4
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 1.5e-213 746.5 598 63.7
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 7.7e-213 744.2 591 61.6
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 7.7e-213 744.2 686 58.0
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 1.9e-211 739.6 590 61.5
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 2.5e-211 739.2 586 62.5
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.5e-211 739.2 589 65.0
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.6e-210 736.5 588 61.6
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.4e-209 733.4 586 61.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 1.4e-209 733.4 591 61.1
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 3.9e-209 731.9 620 60.5
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 6.7e-209 731.1 590 61.0
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 7.0e-206 721.1 656 58.1
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 7.2e-203 711.1 595 61.8
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.8e-201 706.4 577 62.2
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 6.7e-201 704.5 584 59.1
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 6.3e-199 698.0 522 69.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.7e-196 689.9 488 69.3
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 6.5e-196 688.0 551 61.2
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 4.3e-147 525.8 383 67.4
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.0e-144 516.9 394 64.2
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.7e-133 479.9 613 43.9
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 9.9e-128 461.5 456 51.8
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.6e-125 454.1 235 92.3
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.1e-115 421.4 596 40.3
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 2.6e-99 367.1 531 42.7
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.4e-81 307.4 287 57.1
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 9.1e-81 305.4 249 58.2
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 4.7e-77 293.1 209 71.3
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-77 292.4 603 34.8
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 6.8e-52 209.5 171 59.6
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.9e-49 201.4 158 65.2
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 8.6e-39 166.0 130 60.0
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 5.2e-36 156.8 110 63.6
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 2.4e-33 147.9 110 69.1
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 1.6e-32 145.2 79 81.0
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 2.4e-28 131.3 65 89.2
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 3.6e-21 107.5 315 25.7
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 1.6e-16 92.0 83 56.6
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 3.0e-15 87.8 52 82.7
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 1.5e-11 75.5 39 82.1
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 8.4e-10 69.7 43 72.1
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 7.1e-09 66.6 377 23.6
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.6e-08 65.5 32 93.8
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 2.1e-08 65.1 433 22.6
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 4.6e-08 63.9 378 22.8
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 6.0e-08 63.5 398 21.6
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.3e-07 62.4 433 22.2
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.8e-07 62.0 425 21.4
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 1.8e-07 62.0 493 20.9
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.8e-07 62.0 41 68.3
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.3e-07 61.6 444 23.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 3.0e-07 61.2 456 21.7
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 3.0e-07 61.2 354 22.9
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 5.1e-07 60.5 439 22.6
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 5.1e-07 60.5 438 22.8
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 5.1e-07 60.5 386 22.5
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 5.1e-07 60.5 389 22.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 6.7e-07 60.1 434 21.2
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 8.7e-07 59.7 360 21.1
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 8.7e-07 59.7 356 21.3
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.1e-06 59.3 377 21.8
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.1e-06 59.3 433 22.2
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.1e-06 59.3 377 22.0
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.1e-06 59.3 398 20.6
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.1e-06 59.3 377 22.3
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 1.5e-06 58.9 358 22.1
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 2.5e-06 58.2 432 21.8
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 3.3e-06 57.8 433 21.5
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 4.3e-06 57.4 354 23.4
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 4.3e-06 57.4 379 22.4
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 4.3e-06 57.4 433 21.7
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 5.6e-06 57.0 433 21.7
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 7.4e-06 56.6 377 21.8
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 9.6e-06 56.2 437 21.5


User provided reference genes

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